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nstd228 (Fan et al. 2022)

Organism:
Human
Study Type:
Case-Set
Submitter:
Niroshini Senaratne
Description:
We performed clinical phenotyping and cytogenetic analyses of two siblings with a history of developmental delay (DD), intellectual disability (ID) and dysmorphic features. The proband, a 38-year-old female, has a history of short stature, dysmorphic features and aortic coarctation. She underwent chromosomal microarray analysis (CMA), which identified partial monosomy of 4q and partial trisomy of 10p. Her brother, a 37-year-old male, has a history of more severe DD, behavioral problems, dysmorphic features, and congenital anomalies. Subsequently, karyotype confirmed two different unbalanced translocations in the siblings: 46,XX,der(4)t(4;10)(q33;p15.1) and 46,XY,der(10)t(4;10)(q33;p15.1), respectively. These chromosomal rearrangements represent two possible outcomes from a parent who is a carrier for a balanced translocation 46,XX,t(4;10)(q33;p15.1). To our knowledge, this 4q and 10p translocation has not been described in literature. See Variant Summary counts for nstd228 in dbVar Variant Summary.

Detailed Information: Download 2 Variant Regions, Download 2 Variant Calls, Download Both, FTP

Variant Summary

Assembly used for analysis:
Remapped: GRCh38 (hg38)
Submitted: GRCh37 (hg19)

Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000004.12Chr411RemappedNC_000004.12
NC_000010.11Chr1011RemappedNC_000010.11
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000004.11Chr411SubmittedNC_000004.11
NC_000010.10Chr1011SubmittedNC_000010.10

Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
NC_000004.11Chr4110000110000
NC_000010.10Chr10101000101000

Samplesets

Number of Samplesets: 1

Size:
3
Organisms:
Homo sapiens
Sampleset Phenotype(s):
None reported
  • Download Samples as CSV file
  • Samples for sampleset 1
    Sample IDSubject ID SexSubject AgeSubject Phenotype
    11Female38 yearsNot reported

    Experimental Details

    Experiment IDTypeMethodAnalysisPlatformsNumber of Variant Calls
    1DiscoverySNP arraySNP genotyping analysisThermoFisher Genome-Wide SNP Array CytoScan HD2
    2ValidationKaryotypingManual observationG-banding2

    Validations

    Experiment IDMethodAnalysisPlatformNumber of Variant Calls Validated
    2KaryotypingManual observationG-banding2
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