nstd4 (Perry et al. 2008)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Charles Lee
- Submitter URL:
- http://research.jax.org/faculty/charles-lee.html
- Description:
- We used a high-resolution array-based comparative genomic hybridization (aCGH) platform that targeted known CNV regions of the human genome at approximately 1 kb resolution to interrogate the genomic DNAs of 30 individuals from four HapMap populations. See Variant Summary counts for nstd4 in dbVar Variant Summary.
- Publication(s):
- Perry et al. 2008
Detailed Information: Download 2949 Variant Regions, Download 17817 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI35 (hg17)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 216 | 1,543 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 241 | 1,138 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 154 | 695 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 209 | 1,050 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 139 | 1,148 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 155 | 970 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 199 | 1,281 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 132 | 862 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 158 | 797 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 146 | 990 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 115 | 684 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 152 | 625 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 59 | 267 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 56 | 338 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 121 | 892 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 151 | 1,031 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 102 | 762 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 47 | 274 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 103 | 636 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 58 | 274 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 27 | 84 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 50 | 440 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 72 | 230 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 37 | 152 | Remapped | NC_000024.10 |
| NT_167211.2 | Unplaced|NT_167211.2 | 0 | 1 | Remapped | NT_167211.2 |
| NT_187517.1 | Chr1|NT_187517.1 | 0 | 5 | Remapped | NT_187517.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 5 | 31 | Remapped | NT_187518.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 5 | 31 | Remapped | NT_187646.1 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 1 | 1 | Remapped | NW_003315906.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 1 | 3 | Remapped | NW_011332687.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 0 | 139 | Remapped | NW_012132914.1 |
| NW_015495298.1 | Chr1|NW_015495298.1 | 0 | 5 | Remapped | NW_015495298.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 6 | 66 | Remapped | NW_017852928.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 2 | 29 | Remapped | NW_018654707.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 2 | 9 | Remapped | NT_187523.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 0 | 1 | Remapped | NT_187525.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 1 | 6 | Remapped | NT_187527.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 0 | 16 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 1 | 2 | Remapped | NT_187529.1 |
| NT_187530.1 | Chr2|NT_187530.1 | 2 | 2 | Remapped | NT_187530.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 2 | 9 | Remapped | NT_187647.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 1 | 1 | Remapped | NT_187648.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 0 | 38 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 0 | 33 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 0 | 33 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 0 | 33 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 0 | 33 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 1 | 62 | Remapped | NT_187532.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 3 | 21 | Remapped | NT_187534.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 1 | 2 | Remapped | NT_187537.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 3 | 30 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 0 | 33 | Remapped | NT_187649.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 1 | 1 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 1 | 10 | Remapped | NW_019805489.1 |
| NW_019805490.1 | Chr3|NW_019805490.1 | 1 | 2 | Remapped | NW_019805490.1 |
| NW_019805492.1 | Chr3|NW_019805492.1 | 1 | 1 | Remapped | NW_019805492.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 3 | 12 | Remapped | NT_187679.1 |
| NT_167250.2 | Chr4|NT_167250.2 | 3 | 28 | Remapped | NT_167250.2 |
| NT_187542.1 | Chr4|NT_187542.1 | 1 | 1 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 1 | 9 | Remapped | NT_187543.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 2 | 5 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 1 | 9 | Remapped | NT_187650.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 1 | 1 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 2 | 21 | Remapped | NW_003315915.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 1 | 2 | Remapped | NT_187546.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 0 | 38 | Remapped | NT_187548.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 1 | 1 | Remapped | NT_187550.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 0 | 142 | Remapped | NT_187651.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 1 | 136 | Remapped | NW_003315917.2 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 1 | 1 | Remapped | NW_003571036.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 2 | 11 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 1 | 2 | Remapped | NW_016107298.1 |
| NT_187692.1 | Chr6|NT_187692.1 | 1 | 2 | Remapped | NT_187692.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 20 | 239 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 22 | 188 | Remapped | NT_167247.2 |
| NT_167248.2 | Chr6|NT_167248.2 | 25 | 226 | Remapped | NT_167248.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 22 | 238 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 21 | 229 | Remapped | NT_167245.2 |
| NT_113891.3 | Chr6|NT_113891.3 | 24 | 228 | Remapped | NT_113891.3 |
| NT_167244.2 | Chr6|NT_167244.2 | 7 | 68 | Remapped | NT_167244.2 |
| NT_187553.1 | Chr6|NT_187553.1 | 6 | 47 | Remapped | NT_187553.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 1 | 1 | Remapped | NT_187556.1 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 4 | 7 | Remapped | NW_009646200.1 |
| NW_013171802.1 | Chr6|NW_013171802.1 | 1 | 1 | Remapped | NW_013171802.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 1 | 1 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 3 | 14 | Remapped | NT_187558.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 2 | 3 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 9 | 91 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 3 | 16 | Remapped | NT_187563.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 3 | 27 | Remapped | NT_187653.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 0 | 28 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 1 | 25 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 1 | 2 | Remapped | NW_019805493.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 2 | 9 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 3 | 23 | Remapped | NT_187566.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 0 | 31 | Remapped | NT_187570.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 4 | 39 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 2 | 3 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 3 | 33 | Remapped | NT_187654.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 2 | 2 | Remapped | NW_017852931.1 |
| NW_017852932.1 | Chr8|NW_017852932.1 | 2 | 2 | Remapped | NW_017852932.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 1 | 1 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 10 | 153 | Remapped | NW_018654717.1 |
| NW_019805494.1 | Chr8|NW_019805494.1 | 0 | 1 | Remapped | NW_019805494.1 |
| NW_003315928.1 | Chr9|NW_003315928.1 | 1 | 1 | Remapped | NW_003315928.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 1 | 1 | Remapped | NT_187579.1 |
| NT_187580.1 | Chr10|NT_187580.1 | 1 | 1 | Remapped | NT_187580.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 1 | Remapped | NW_003315934.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 1 | 13 | Remapped | NW_013171806.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 2 | 9 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 1 | 7 | Remapped | NT_187656.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 2 | 19 | Remapped | NT_187585.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 1 | 2 | Remapped | NW_003871074.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 1 | 2 | Remapped | NW_015148966.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 1 | 30 | Remapped | NW_019805495.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 0 | 1 | Remapped | NW_019805497.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 6 | 43 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 1 | 27 | Remapped | NT_187587.1 |
| NT_187588.1 | Chr12|NT_187588.1 | 0 | 5 | Remapped | NT_187588.1 |
| NT_187589.1 | Chr12|NT_187589.1 | 1 | 10 | Remapped | NT_187589.1 |
| NT_187591.1 | Chr12|NT_187591.1 | 2 | 2 | Remapped | NT_187591.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 1 | Remapped | NW_003315940.1 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 2 | 7 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 3 | 33 | Remapped | NW_003571050.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 1 | 1 | Remapped | NW_009646204.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 1 | 6 | Remapped | NW_011332696.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 1 | 28 | Remapped | NW_018654718.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 2 | 10 | Remapped | NT_187594.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 2 | 8 | Remapped | NW_011332699.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 1 | 2 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 3 | 32 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 21 | 92 | Remapped | NT_187660.1 |
| NT_187382.1 | Chr15|NT_187382.1 | 0 | 6 | Remapped | NT_187382.1 |
| NT_187602.1 | Chr15|NT_187602.1 | 0 | 10 | Remapped | NT_187602.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 4 | 34 | Remapped | NT_187603.1 |
| NT_187604.1 | Chr15|NT_187604.1 | 0 | 30 | Remapped | NT_187604.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 3 | 23 | Remapped | NT_187605.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 3 | 17 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 3 | 35 | Remapped | NW_003315943.1 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 26 | 111 | Remapped | NW_011332701.1 |
| NT_187383.1 | Chr16|NT_187383.1 | 0 | 5 | Remapped | NT_187383.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 12 | 73 | Remapped | NT_187607.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 1 | 2 | Remapped | NT_187610.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 9 | 25 | Remapped | NW_017852933.1 |
| NW_018654723.1 | Chr16|NW_018654723.1 | 1 | 1 | Remapped | NW_018654723.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 0 | 60 | Remapped | NT_187661.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 1 | 34 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 3 | 15 | Remapped | NT_187664.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 1 | 28 | Remapped | NW_003871093.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 1 | 20 | Remapped | NT_167251.2 |
| NT_187611.1 | Chr17|NT_187611.1 | 1 | 1 | Remapped | NT_187611.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 3 | 37 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 7 | 121 | Remapped | NT_187614.1 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 2 | 4 | Remapped | NW_003315953.2 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 1 | 1 | Remapped | NW_003315955.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 1 | 9 | Remapped | NW_003871092.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 1 | 1 | Remapped | NW_017363817.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 1 | 49 | Remapped | NW_017363819.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 2 | 49 | Remapped | NT_187665.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 2 | 49 | Remapped | NW_003315958.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 18 | 85 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 9 | 47 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 5 | 28 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 5 | 28 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 5 | 28 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 12 | 57 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 5 | 28 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 7 | 43 | Remapped | NW_003571055.2 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 1 | 26 | Remapped | NW_003315963.1 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 3 | 8 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 12 | 70 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 2 | 4 | Remapped | NW_009646206.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 4 | 12 | Remapped | NW_014040929.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 2 | 25 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 3 | 19 | Remapped | NT_187624.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 1 | 6 | Remapped | NW_003315968.2 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 1 | 1 | Remapped | NW_015148969.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 0 | 4 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 1 | 107 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 3 | 12 | Remapped | NW_003315972.2 |
| NW_018654726.1 | ChrY|NW_018654726.1 | 0 | 1 | Remapped | NW_018654726.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 212 | 1,616 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 244 | 1,144 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 155 | 696 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 208 | 1,046 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 139 | 1,148 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 157 | 974 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 199 | 1,300 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 133 | 888 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 163 | 818 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 146 | 1,029 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 115 | 684 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 151 | 624 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 59 | 267 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 56 | 338 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 124 | 909 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 152 | 1,038 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 102 | 780 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 47 | 275 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 99 | 624 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 56 | 271 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 27 | 80 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 51 | 538 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 69 | 217 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 37 | 152 | Remapped | NC_000024.9 |
| NW_003315903.1 | Chr1|NW_003315903.1 | 1 | 5 | Remapped | NW_003315903.1 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 1 | 1 | Remapped | NW_003315906.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 20 | 146 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 5 | 38 | Remapped | NW_003871056.3 |
| NW_003871057.1 | Chr1|NW_003871057.1 | 1 | 6 | Remapped | NW_003871057.1 |
| NW_003571032.1 | Chr2|NW_003571032.1 | 6 | 17 | Remapped | NW_003571032.1 |
| NT_167250.1 | Chr4|NT_167250.1 | 3 | 28 | Remapped | NT_167250.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 1 | 1 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 2 | 21 | Remapped | NW_003315915.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 1 | 4 | Remapped | NW_003571034.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 3 | 8 | Remapped | NW_004775427.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 0 | 161 | Remapped | NW_003315917.2 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 1 | 1 | Remapped | NW_003571036.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 6 | 64 | Remapped | NW_004775428.1 |
| NT_113891.2 | Chr6|NT_113891.2 | 24 | 225 | Remapped | NT_113891.2 |
| NT_167244.1 | Chr6|NT_167244.1 | 7 | 68 | Remapped | NT_167244.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 21 | 241 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 20 | 244 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 22 | 185 | Remapped | NT_167247.1 |
| NT_167248.1 | Chr6|NT_167248.1 | 25 | 241 | Remapped | NT_167248.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 22 | 235 | Remapped | NT_167249.1 |
| NW_003871063.1 | Chr6|NW_003871063.1 | 2 | 39 | Remapped | NW_003871063.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 3 | 20 | Remapped | NW_004070866.1 |
| NW_003571037.1 | Chr7|NW_003571037.1 | 1 | 9 | Remapped | NW_003571037.1 |
| NW_003571039.1 | Chr7|NW_003571039.1 | 4 | 13 | Remapped | NW_003571039.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 9 | 91 | Remapped | NW_003571040.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 15 | 95 | Remapped | NW_003871064.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 2 | 70 | Remapped | NW_004775430.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 1 | 5 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 4 | 39 | Remapped | NW_003571042.1 |
| NT_113915.1 | Chr9|NT_113915.1 | 0 | 13 | Remapped | NT_113915.1 |
| NW_003315928.1 | Chr9|NW_003315928.1 | 2 | 2 | Remapped | NW_003315928.1 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 3 | 9 | Remapped | NW_003871067.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 1 | Remapped | NW_003315934.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 4 | 16 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 8 | 230 | Remapped | NW_003871068.1 |
| NW_004070870.1 | Chr10|NW_004070870.1 | 3 | 10 | Remapped | NW_004070870.1 |
| NW_004504302.1 | Chr10|NW_004504302.1 | 3 | 10 | Remapped | NW_004504302.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 1 | 1 | Remapped | NW_004775432.1 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 1 | 1 | Remapped | NW_003571045.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 1 | 2 | Remapped | NW_003871074.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 1 | Remapped | NW_003315940.1 |
| NW_003571047.1 | Chr12|NW_003571047.1 | 0 | 1 | Remapped | NW_003571047.1 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 1 | 2 | Remapped | NW_003571048.1 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 1 | 5 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 0 | 2 | Remapped | NW_003571050.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 1 | 1 | Remapped | NW_004166863.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 3 | 32 | Remapped | NW_003315943.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 2 | 23 | Remapped | NT_167251.1 |
| NW_003315948.2 | Chr17|NW_003315948.2 | 1 | 15 | Remapped | NW_003315948.2 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 2 | 94 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 6 | 19 | Remapped | NW_003315950.2 |
| NW_003315953.1 | Chr17|NW_003315953.1 | 2 | 4 | Remapped | NW_003315953.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 1 | 1 | Remapped | NW_003315955.1 |
| NW_003871086.1 | Chr17|NW_003871086.1 | 0 | 17 | Remapped | NW_003871086.1 |
| NW_003871088.1 | Chr17|NW_003871088.1 | 1 | 1 | Remapped | NW_003871088.1 |
| NW_003871089.1 | Chr17|NW_003871089.1 | 1 | 5 | Remapped | NW_003871089.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 0 | 3 | Remapped | NW_003871092.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 0 | 22 | Remapped | NW_003871093.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 0 | 6 | Remapped | NW_004070872.2 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 2 | 3 | Remapped | NW_004775433.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 2 | 49 | Remapped | NW_003315958.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 1 | 26 | Remapped | NW_003315963.1 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 3 | 8 | Remapped | NW_003315965.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 3 | 13 | Remapped | NW_003571053.2 |
| NW_003571061.1 | Chr19|NW_003571061.1 | 1 | 2 | Remapped | NW_003571061.1 |
| NW_003871094.1 | Chr19|NW_003871094.1 | 2 | 28 | Remapped | NW_003871094.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 9 | 40 | Remapped | NW_004166865.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 1 | 6 | Remapped | NW_003315968.1 |
| NW_003315972.1 | Chr22|NW_003315972.1 | 3 | 12 | Remapped | NW_003315972.1 |
| NW_004070874.1 | Chr22|NW_004070874.1 | 0 | 2 | Remapped | NW_004070874.1 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 3 | 3 | Remapped | NW_003871103.3 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 5 | 6 | Remapped | NW_004070880.2 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 1 | 2 | Remapped | NW_004070885.1 |
| NW_004070886.1 | ChrX|NW_004070886.1 | 2 | 2 | Remapped | NW_004070886.1 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 4 | 15 | Remapped | NW_004070887.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 6 | 41 | Remapped | NW_004070888.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 8 | 15 | Remapped | NW_004070890.2 |
| NW_004070892.1 | ChrX|NW_004070892.1 | 3 | 13 | Remapped | NW_004070892.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.8 | Chr1 | 222 | 1,643 | Submitted | NC_000001.8 |
| NC_000002.9 | Chr2 | 244 | 1,145 | Submitted | NC_000002.9 |
| NC_000003.9 | Chr3 | 155 | 696 | Submitted | NC_000003.9 |
| NC_000004.9 | Chr4 | 210 | 1,076 | Submitted | NC_000004.9 |
| NC_000005.8 | Chr5 | 139 | 1,148 | Submitted | NC_000005.8 |
| NC_000006.9 | Chr6 | 157 | 974 | Submitted | NC_000006.9 |
| NC_000007.11 | Chr7 | 206 | 1,368 | Submitted | NC_000007.11 |
| NC_000008.9 | Chr8 | 134 | 898 | Submitted | NC_000008.9 |
| NC_000009.9 | Chr9 | 173 | 870 | Submitted | NC_000009.9 |
| NC_000010.8 | Chr10 | 146 | 1,049 | Submitted | NC_000010.8 |
| NC_000011.8 | Chr11 | 115 | 684 | Submitted | NC_000011.8 |
| NC_000012.9 | Chr12 | 152 | 626 | Submitted | NC_000012.9 |
| NC_000013.9 | Chr13 | 59 | 267 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 56 | 338 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 124 | 936 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 152 | 1,038 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 103 | 840 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 47 | 275 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 110 | 668 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 57 | 272 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 27 | 80 | Submitted | NC_000021.7 |
| NC_000022.8 | Chr22 | 51 | 539 | Submitted | NC_000022.8 |
| NC_000023.8 | ChrX | 72 | 232 | Submitted | NC_000023.8 |
| NC_000024.7 | ChrY | 38 | 155 | Submitted | NC_000024.7 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.8 | Chr1 | 222 | 193 | 4 | 5 | 2 | 18 | 1,643 | 1,384 | 30 | 45 | 9 | 175 |
| NC_000002.9 | Chr2 | 244 | 229 | 4 | 4 | 0 | 7 | 1,145 | 1,103 | 15 | 5 | 0 | 22 |
| NC_000003.9 | Chr3 | 155 | 151 | 3 | 1 | 0 | 0 | 696 | 642 | 36 | 12 | 0 | 6 |
| NC_000004.9 | Chr4 | 210 | 196 | 4 | 2 | 0 | 8 | 1,076 | 1,007 | 10 | 27 | 0 | 32 |
| NC_000005.8 | Chr5 | 139 | 131 | 0 | 1 | 0 | 7 | 1,148 | 899 | 2 | 21 | 0 | 226 |
| NC_000006.9 | Chr6 | 157 | 128 | 0 | 1 | 0 | 28 | 974 | 666 | 0 | 11 | 0 | 297 |
| NC_000007.11 | Chr7 | 206 | 171 | 6 | 1 | 2 | 26 | 1,368 | 1,037 | 86 | 7 | 14 | 224 |
| NC_000008.9 | Chr8 | 134 | 122 | 4 | 4 | 0 | 4 | 898 | 822 | 6 | 36 | 0 | 34 |
| NC_000009.9 | Chr9 | 173 | 141 | 4 | 12 | 10 | 6 | 870 | 760 | 32 | 29 | 38 | 11 |
| NC_000010.8 | Chr10 | 146 | 121 | 4 | 2 | 0 | 19 | 1,049 | 719 | 14 | 29 | 20 | 267 |
| NC_000011.8 | Chr11 | 115 | 112 | 0 | 1 | 0 | 2 | 684 | 679 | 0 | 2 | 0 | 3 |
| NC_000012.9 | Chr12 | 152 | 148 | 1 | 2 | 0 | 1 | 626 | 618 | 1 | 3 | 0 | 4 |
| NC_000013.9 | Chr13 | 59 | 59 | 0 | 0 | 0 | 0 | 267 | 267 | 0 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 56 | 54 | 1 | 0 | 0 | 1 | 338 | 313 | 22 | 1 | 0 | 2 |
| NC_000015.8 | Chr15 | 124 | 114 | 4 | 3 | 0 | 3 | 936 | 842 | 17 | 20 | 26 | 31 |
| NC_000016.8 | Chr16 | 152 | 150 | 0 | 1 | 0 | 1 | 1,038 | 1,034 | 0 | 3 | 0 | 1 |
| NC_000017.9 | Chr17 | 103 | 82 | 2 | 2 | 0 | 17 | 840 | 569 | 74 | 65 | 0 | 132 |
| NC_000018.8 | Chr18 | 47 | 43 | 0 | 1 | 0 | 3 | 275 | 224 | 0 | 1 | 0 | 50 |
| NC_000019.8 | Chr19 | 110 | 95 | 3 | 2 | 1 | 9 | 668 | 580 | 7 | 4 | 2 | 75 |
| NC_000020.9 | Chr20 | 57 | 55 | 0 | 1 | 1 | 0 | 272 | 267 | 0 | 1 | 1 | 3 |
| NC_000021.7 | Chr21 | 27 | 25 | 1 | 0 | 0 | 1 | 80 | 73 | 1 | 0 | 0 | 6 |
| NC_000022.8 | Chr22 | 51 | 46 | 1 | 1 | 0 | 3 | 539 | 493 | 18 | 16 | 0 | 12 |
| NC_000023.8 | ChrX | 72 | 38 | 1 | 4 | 0 | 29 | 232 | 123 | 2 | 21 | 2 | 84 |
| NC_000024.7 | ChrY | 38 | 36 | 1 | 0 | 1 | 0 | 155 | 151 | 1 | 0 | 3 | 0 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.8 | Chr1 | 222 | 159 | 36 | 5 | 7 | 15 | 1,643 | 1,020 | 317 | 47 | 45 | 214 |
| NC_000002.9 | Chr2 | 244 | 224 | 9 | 5 | 0 | 6 | 1,145 | 1,075 | 25 | 8 | 0 | 37 |
| NC_000003.9 | Chr3 | 155 | 139 | 2 | 1 | 1 | 12 | 696 | 550 | 4 | 13 | 1 | 128 |
| NC_000004.9 | Chr4 | 210 | 189 | 9 | 1 | 0 | 11 | 1,076 | 984 | 24 | 26 | 0 | 42 |
| NC_000005.8 | Chr5 | 139 | 130 | 1 | 1 | 0 | 7 | 1,148 | 870 | 3 | 21 | 0 | 254 |
| NC_000006.9 | Chr6 | 157 | 116 | 0 | 1 | 2 | 38 | 974 | 630 | 7 | 22 | 4 | 311 |
| NC_000007.11 | Chr7 | 206 | 161 | 18 | 7 | 4 | 16 | 1,368 | 945 | 225 | 41 | 26 | 131 |
| NC_000008.9 | Chr8 | 134 | 101 | 5 | 4 | 0 | 24 | 898 | 617 | 6 | 37 | 0 | 238 |
| NC_000009.9 | Chr9 | 173 | 141 | 9 | 4 | 15 | 4 | 870 | 638 | 119 | 35 | 72 | 6 |
| NC_000010.8 | Chr10 | 146 | 127 | 9 | 6 | 0 | 4 | 1,049 | 792 | 126 | 55 | 59 | 17 |
| NC_000011.8 | Chr11 | 115 | 105 | 3 | 1 | 0 | 6 | 684 | 617 | 4 | 2 | 0 | 61 |
| NC_000012.9 | Chr12 | 152 | 135 | 0 | 1 | 0 | 16 | 626 | 487 | 0 | 2 | 0 | 137 |
| NC_000013.9 | Chr13 | 59 | 57 | 0 | 0 | 0 | 2 | 267 | 259 | 0 | 0 | 0 | 8 |
| NC_000014.7 | Chr14 | 56 | 51 | 2 | 2 | 0 | 1 | 338 | 300 | 4 | 32 | 0 | 2 |
| NC_000015.8 | Chr15 | 124 | 84 | 3 | 4 | 0 | 33 | 936 | 663 | 17 | 30 | 17 | 209 |
| NC_000016.8 | Chr16 | 152 | 126 | 1 | 1 | 0 | 24 | 1,038 | 916 | 1 | 17 | 0 | 104 |
| NC_000017.9 | Chr17 | 103 | 74 | 8 | 4 | 0 | 17 | 840 | 414 | 106 | 48 | 24 | 248 |
| NC_000018.8 | Chr18 | 47 | 43 | 0 | 2 | 0 | 2 | 275 | 207 | 0 | 16 | 1 | 51 |
| NC_000019.8 | Chr19 | 110 | 78 | 8 | 0 | 1 | 23 | 668 | 513 | 31 | 3 | 2 | 119 |
| NC_000020.9 | Chr20 | 57 | 47 | 3 | 2 | 0 | 5 | 272 | 221 | 5 | 2 | 0 | 44 |
| NC_000021.7 | Chr21 | 27 | 23 | 0 | 0 | 1 | 3 | 80 | 65 | 0 | 0 | 1 | 14 |
| NC_000022.8 | Chr22 | 51 | 41 | 4 | 2 | 0 | 4 | 539 | 409 | 32 | 17 | 28 | 53 |
| NC_000023.8 | ChrX | 72 | 52 | 13 | 7 | 0 | 0 | 232 | 133 | 48 | 49 | 2 | 0 |
| NC_000024.7 | ChrY | 38 | 34 | 3 | 0 | 1 | 0 | 155 | 147 | 4 | 0 | 3 | 1 |
Samplesets
Number of Samplesets: 1
- Name:
- HAPMAP30
- Description:
- DNA from 30 HAPMAP individuals
- Size:
- 30
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Age | Subject Phenotype |
|---|---|---|---|---|---|---|
| NA19132 | B-Lymphocyte | NA19132 | Female | YORUBA | Not reported | |
| NA19221 | B-Lymphocyte | NA19221 | Female | YORUBA | Not reported | |
| NA10847 | B-Lymphocyte | NA10847 | Female | UTAH/MORMON | 38 Years | Not reported |
| NA10839 | B-Lymphocyte | NA10839 | Female | UTAH/MORMON | 55 Years | Not reported |
| NA12155 | B-Lymphocyte | NA12155 | Male | UTAH/MORMON | 86 Years | Not reported |
| NA18563 | B-Lymphocyte | NA18563 | Male | HAN CHINESE | Not reported | |
| NA18537 | B-Lymphocyte | NA18537 | Female | HAN CHINESE | Not reported | |
| NA18502 | B-Lymphocyte | NA18502 | Female | YORUBA | Not reported | |
| NA07029 | B-Lymphocyte | NA07029 | Male | UTAH/MORMON | 47 Years | Not reported |
| NA12872 | B-Lymphocyte | NA12872 | Male | UTAH/MORMON | Not reported | |
| NA11830 | B-Lymphocyte | NA11830 | Female | UTAH/MORMON | 63 Years | Not reported |
| NA10863 | B-Lymphocyte | NA10863 | Female | UTAH/MORMON | 43 Years | Not reported |
| NA18980 | B-Lymphocyte | NA18980 | Female | JAPANESE | Not reported | |
| NA18972 | B-Lymphocyte | NA18972 | Female | JAPANESE | Not reported | |
| NA18572 | B-Lymphocyte | NA18572 | Male | HAN CHINESE | Not reported | |
| NA18942 | B-Lymphocyte | NA18942 | Female | JAPANESE | Not reported | |
| NA19007 | B-Lymphocyte | NA19007 | Male | JAPANESE | Not reported | |
| NA18853 | B-Lymphocyte | NA18853 | Male | YORUBA | Not reported | |
| NA19173 | B-Lymphocyte | NA19173 | Male | YORUBA | Not reported | |
| NA18975 | B-Lymphocyte | NA18975 | Female | JAPANESE | Not reported | |
| NA18564 | B-Lymphocyte | NA18564 | Female | HAN CHINESE | Not reported | |
| NA19144 | B-Lymphocyte | NA19144 | Male | YORUBA | Not reported | |
| NA18552 | B-Lymphocyte | NA18552 | Female | HAN CHINESE | Not reported | |
| NA07048 | B-Lymphocyte | NA07048 | Male | UTAH/MORMON | 43 Years | Not reported |
| NA12802 | B-Lymphocyte | NA12802 | Female | UTAH/MORMON | Not reported | |
| NA18860 | B-Lymphocyte | NA18860 | Male | YORUBA | Not reported | |
| NA12740 | B-Lymphocyte | NA12740 | Female | UTAH/MORMON | Not reported | |
| NA18517 | B-Lymphocyte | NA18517 | Female | YORUBA | Not reported | |
| NA19240 | B-Lymphocyte | NA19240 | Female | YORUBA | Not reported | |
| NA18504 | B-Lymphocyte | NA18504 | Male | YORUBA | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Data | Number of Variant Calls |
|---|---|---|---|---|---|---|
| 1 | Discovery | Oligo aCGH | Probe signal intensity | Agilent-015685 Custom Human 244K CGH Microarray, Agilent-015686 Custom Human 244K CGH Microarray | GEO | 17,817 |