nstd49 (Teague et al. 2010)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Brian Teague
- Description:
- We analyzed four phenotypically normal human genomes using Optical Mapping, a single-molecule platform for genome structure analysis. See Variant Summary counts for nstd49 in dbVar Variant Summary.
- Publication(s):
- Teague et al. 2010
Detailed Information: Download 4197 Variant Regions, Download 7024 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI35 (hg17)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 340 | 570 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 312 | 542 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 280 | 467 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 280 | 496 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 272 | 479 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 241 | 422 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 236 | 391 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 213 | 361 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 136 | 231 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 161 | 257 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 216 | 345 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 180 | 319 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 158 | 275 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 124 | 198 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 101 | 174 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 133 | 195 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 118 | 190 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 105 | 169 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 99 | 153 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 67 | 113 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 64 | 117 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 66 | 101 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 251 | 388 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 9 | 9 | Remapped | NC_000024.10 |
| NT_187514.1 | Chr1|NT_187514.1 | 1 | 4 | Remapped | NT_187514.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 2 | 2 | Remapped | NT_187516.1 |
| NT_187517.1 | Chr1|NT_187517.1 | 1 | 2 | Remapped | NT_187517.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 3 | 4 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 3 | 6 | Remapped | NT_187519.1 |
| NT_187521.1 | Chr1|NT_187521.1 | 1 | 4 | Remapped | NT_187521.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 3 | 4 | Remapped | NT_187646.1 |
| NW_003315907.2 | Chr1|NW_003315907.2 | 2 | 2 | Remapped | NW_003315907.2 |
| NW_009646194.1 | Chr1|NW_009646194.1 | 1 | 1 | Remapped | NW_009646194.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 1 | 4 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 1 | 3 | Remapped | NW_011332688.1 |
| NW_014040925.1 | Chr1|NW_014040925.1 | 2 | 5 | Remapped | NW_014040925.1 |
| NW_014040926.1 | Chr1|NW_014040926.1 | 1 | 4 | Remapped | NW_014040926.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 1 | 2 | Remapped | NW_014040927.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 2 | 3 | Remapped | NW_017852928.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 3 | 3 | Remapped | NW_018654707.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 1 | 1 | Remapped | NW_018654708.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 1 | 1 | Remapped | NT_187524.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 2 | 4 | Remapped | NT_187525.1 |
| NT_187526.1 | Chr2|NT_187526.1 | 1 | 1 | Remapped | NT_187526.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 1 | 2 | Remapped | NT_187529.1 |
| NT_187531.1 | Chr2|NT_187531.1 | 1 | 3 | Remapped | NT_187531.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 1 | 1 | Remapped | NT_187648.1 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 1 | 2 | Remapped | NW_003315908.1 |
| NW_003315909.1 | Chr2|NW_003315909.1 | 1 | 4 | Remapped | NW_003315909.1 |
| NW_003571033.2 | Chr2|NW_003571033.2 | 1 | 1 | Remapped | NW_003571033.2 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 1 | 1 | Remapped | NW_011332689.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 1 | 2 | Remapped | NW_012132915.1 |
| NW_015495299.1 | Chr2|NW_015495299.1 | 1 | 1 | Remapped | NW_015495299.1 |
| NW_018654709.1 | Chr2|NW_018654709.1 | 2 | 2 | Remapped | NW_018654709.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 1 | 3 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 1 | 1 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 1 | 1 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 2 | 2 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 1 | 1 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 1 | 1 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 2 | 2 | Remapped | NT_187532.1 |
| NT_187533.1 | Chr3|NT_187533.1 | 1 | 4 | Remapped | NT_187533.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 1 | 1 | Remapped | NT_187534.1 |
| NT_187535.1 | Chr3|NT_187535.1 | 1 | 1 | Remapped | NT_187535.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 2 | 3 | Remapped | NT_187537.1 |
| NT_187538.1 | Chr3|NT_187538.1 | 1 | 3 | Remapped | NT_187538.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 2 | 3 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 1 | 1 | Remapped | NT_187649.1 |
| NW_003315913.1 | Chr3|NW_003315913.1 | 1 | 3 | Remapped | NW_003315913.1 |
| NW_017363813.1 | Chr3|NW_017363813.1 | 2 | 2 | Remapped | NW_017363813.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 2 | 2 | Remapped | NW_018654711.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 1 | 1 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 1 | 2 | Remapped | NW_019805489.1 |
| NW_019805490.1 | Chr3|NW_019805490.1 | 1 | 1 | Remapped | NW_019805490.1 |
| NW_019805491.1 | Chr3|NW_019805491.1 | 1 | 2 | Remapped | NW_019805491.1 |
| NW_019805492.1 | Chr3|NW_019805492.1 | 1 | 3 | Remapped | NW_019805492.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 2 | 4 | Remapped | NT_187679.1 |
| NT_167250.2 | Chr4|NT_167250.2 | 1 | 3 | Remapped | NT_167250.2 |
| NT_187541.1 | Chr4|NT_187541.1 | 1 | 2 | Remapped | NT_187541.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 1 | 3 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 1 | 1 | Remapped | NT_187543.1 |
| NT_187544.1 | Chr4|NT_187544.1 | 1 | 1 | Remapped | NT_187544.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 1 | 1 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 1 | 1 | Remapped | NT_187650.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 2 | 4 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 2 | 2 | Remapped | NW_003315915.1 |
| NW_013171799.1 | Chr4|NW_013171799.1 | 1 | 2 | Remapped | NW_013171799.1 |
| NW_013171800.1 | Chr4|NW_013171800.1 | 2 | 2 | Remapped | NW_013171800.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 4 | 11 | Remapped | NW_017363814.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 1 | 2 | Remapped | NT_187546.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 1 | 1 | Remapped | NT_187547.1 |
| NT_187549.1 | Chr5|NT_187549.1 | 1 | 1 | Remapped | NT_187549.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 1 | 2 | Remapped | NT_187550.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 7 | 14 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 1 | 2 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 7 | 12 | Remapped | NW_003315917.2 |
| NW_003315918.1 | Chr5|NW_003315918.1 | 2 | 4 | Remapped | NW_003315918.1 |
| NW_003315919.1 | Chr5|NW_003315919.1 | 1 | 3 | Remapped | NW_003315919.1 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 2 | 3 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 1 | 4 | Remapped | NW_003571036.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 2 | 2 | Remapped | NW_009646199.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 1 | 1 | Remapped | NW_016107297.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 13 | 19 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 14 | 20 | Remapped | NT_167247.2 |
| NT_167248.2 | Chr6|NT_167248.2 | 15 | 21 | Remapped | NT_167248.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 15 | 22 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 13 | 19 | Remapped | NT_167245.2 |
| NT_113891.3 | Chr6|NT_113891.3 | 15 | 21 | Remapped | NT_113891.3 |
| NT_167244.2 | Chr6|NT_167244.2 | 9 | 12 | Remapped | NT_167244.2 |
| NT_187553.1 | Chr6|NT_187553.1 | 3 | 4 | Remapped | NT_187553.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 1 | 1 | Remapped | NT_187555.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 2 | 4 | Remapped | NT_187556.1 |
| NT_187557.1 | Chr6|NT_187557.1 | 2 | 3 | Remapped | NT_187557.1 |
| NW_003315921.1 | Chr6|NW_003315921.1 | 1 | 4 | Remapped | NW_003315921.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 1 | 2 | Remapped | NW_004166862.2 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 2 | 7 | Remapped | NW_009646200.1 |
| NW_013171802.1 | Chr6|NW_013171802.1 | 2 | 4 | Remapped | NW_013171802.1 |
| NW_013171803.1 | Chr6|NW_013171803.1 | 3 | 4 | Remapped | NW_013171803.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 2 | 2 | Remapped | NT_187558.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 1 | 1 | Remapped | NT_187560.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 2 | 2 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 3 | 6 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 1 | 3 | Remapped | NT_187563.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 1 | 1 | Remapped | NT_187564.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 2 | 2 | Remapped | NT_187653.1 |
| NW_003315922.2 | Chr7|NW_003315922.2 | 1 | 1 | Remapped | NW_003315922.2 |
| NW_017852929.1 | Chr7|NW_017852929.1 | 1 | 3 | Remapped | NW_017852929.1 |
| NW_017852930.1 | Chr7|NW_017852930.1 | 1 | 1 | Remapped | NW_017852930.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 3 | 4 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 2 | 3 | Remapped | NW_019805493.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 1 | 1 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 1 | 1 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 1 | 4 | Remapped | NT_187566.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 2 | 4 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 1 | 2 | Remapped | NT_187568.1 |
| NT_187572.1 | Chr8|NT_187572.1 | 1 | 1 | Remapped | NT_187572.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 0 | 2 | Remapped | NT_187574.1 |
| NT_187575.1 | Chr8|NT_187575.1 | 0 | 3 | Remapped | NT_187575.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 3 | 8 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 2 | 4 | Remapped | NT_187577.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 2 | 2 | Remapped | NT_187655.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 4 | 5 | Remapped | NW_017852931.1 |
| NW_017852932.1 | Chr8|NW_017852932.1 | 1 | 2 | Remapped | NW_017852932.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 8 | 15 | Remapped | NW_018654717.1 |
| NW_019805494.1 | Chr8|NW_019805494.1 | 2 | 2 | Remapped | NW_019805494.1 |
| NT_187578.1 | Chr9|NT_187578.1 | 1 | 1 | Remapped | NT_187578.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 2 | 3 | Remapped | NW_003315931.1 |
| NW_013171804.1 | Chr9|NW_013171804.1 | 1 | 3 | Remapped | NW_013171804.1 |
| NW_013171805.1 | Chr9|NW_013171805.1 | 3 | 4 | Remapped | NW_013171805.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 1 | 1 | Remapped | NT_187579.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 2 | Remapped | NW_003315934.1 |
| NW_003315935.1 | Chr10|NW_003315935.1 | 1 | 1 | Remapped | NW_003315935.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 1 | 2 | Remapped | NW_013171806.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 1 | 1 | Remapped | NT_187581.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 2 | 4 | Remapped | NT_187583.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 1 | 1 | Remapped | NW_003315936.1 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 2 | 3 | Remapped | NW_003871073.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 1 | 3 | Remapped | NW_003871074.1 |
| NW_009646203.1 | Chr11|NW_009646203.1 | 1 | 2 | Remapped | NW_009646203.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 2 | 4 | Remapped | NW_011332695.1 |
| NW_013171808.1 | Chr11|NW_013171808.1 | 2 | 3 | Remapped | NW_013171808.1 |
| NW_017363816.1 | Chr11|NW_017363816.1 | 1 | 1 | Remapped | NW_017363816.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 1 | 4 | Remapped | NW_019805495.1 |
| NW_019805496.1 | Chr11|NW_019805496.1 | 1 | 2 | Remapped | NW_019805496.1 |
| NW_019805498.1 | Chr11|NW_019805498.1 | 1 | 1 | Remapped | NW_019805498.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 2 | 4 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 2 | 2 | Remapped | NT_187587.1 |
| NT_187589.1 | Chr12|NT_187589.1 | 1 | 3 | Remapped | NT_187589.1 |
| NT_187590.1 | Chr12|NT_187590.1 | 1 | 2 | Remapped | NT_187590.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 1 | 1 | Remapped | NW_003315938.1 |
| NW_003315939.2 | Chr12|NW_003315939.2 | 3 | 4 | Remapped | NW_003315939.2 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 2 | Remapped | NW_003315940.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 1 | 3 | Remapped | NW_003571050.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 3 | 6 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 5 | 12 | Remapped | NW_018654718.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 2 | 5 | Remapped | NW_018654720.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 1 | 1 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 3 | 4 | Remapped | NT_187592.1 |
| NT_187593.1 | Chr13|NT_187593.1 | 1 | 4 | Remapped | NT_187593.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 3 | 3 | Remapped | NT_187594.1 |
| NT_187595.1 | Chr13|NT_187595.1 | 2 | 4 | Remapped | NT_187595.1 |
| NT_187597.1 | Chr13|NT_187597.1 | 1 | 1 | Remapped | NT_187597.1 |
| NW_013171810.1 | Chr13|NW_013171810.1 | 1 | 3 | Remapped | NW_013171810.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 1 | 1 | Remapped | NW_013171811.1 |
| NT_187599.1 | Chr14|NT_187599.1 | 1 | 1 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 3 | 6 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 1 | 1 | Remapped | NT_187601.1 |
| NW_018654721.1 | Chr14|NW_018654721.1 | 2 | 4 | Remapped | NW_018654721.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 3 | 6 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 0 | 1 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 4 | 8 | Remapped | NT_187660.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 0 | 1 | Remapped | NT_187603.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 1 | 1 | Remapped | NT_187605.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 1 | 2 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 5 | 9 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 9 | 10 | Remapped | NT_187607.1 |
| NW_003315946.1 | Chr16|NW_003315946.1 | 1 | 3 | Remapped | NW_003315946.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 2 | 5 | Remapped | NW_012132921.1 |
| NW_013171812.1 | Chr16|NW_013171812.1 | 1 | 3 | Remapped | NW_013171812.1 |
| NW_013171813.1 | Chr16|NW_013171813.1 | 2 | 4 | Remapped | NW_013171813.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 2 | 5 | Remapped | NW_017852933.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 0 | 1 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 3 | 5 | Remapped | NT_187663.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 1 | 3 | Remapped | NW_003871093.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 2 | 2 | Remapped | NT_167251.2 |
| NT_187613.1 | Chr17|NT_187613.1 | 1 | 1 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 3 | 3 | Remapped | NT_187614.1 |
| NT_187616.1 | Chr17|NT_187616.1 | 2 | 4 | Remapped | NT_187616.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 0 | 3 | Remapped | NW_003315952.3 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 1 | 1 | Remapped | NW_003315953.2 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 2 | 5 | Remapped | NW_003315954.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 1 | 3 | Remapped | NW_003871092.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 1 | 4 | Remapped | NW_017363818.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 2 | 4 | Remapped | NW_017363819.1 |
| NW_019805501.1 | Chr17|NW_019805501.1 | 2 | 4 | Remapped | NW_019805501.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 1 | 2 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 2 | 4 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 1 | 2 | Remapped | NT_187617.1 |
| NT_187618.1 | Chr18|NT_187618.1 | 1 | 1 | Remapped | NT_187618.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 1 | 1 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 1 | 2 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 1 | 2 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 1 | 2 | Remapped | NW_003315959.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 2 | 4 | Remapped | NW_003315961.1 |
| NW_013171814.1 | Chr18|NW_013171814.1 | 2 | 4 | Remapped | NW_013171814.1 |
| NW_014040928.1 | Chr18|NW_014040928.1 | 2 | 2 | Remapped | NW_014040928.1 |
| NW_018654724.1 | Chr18|NW_018654724.1 | 1 | 3 | Remapped | NW_018654724.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 3 | 3 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 3 | 3 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 2 | 2 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 2 | 2 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 2 | 2 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 2 | 2 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 2 | 2 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 3 | 3 | Remapped | NW_003571055.2 |
| NT_187619.1 | Chr19|NT_187619.1 | 1 | 4 | Remapped | NT_187619.1 |
| NT_187620.1 | Chr19|NT_187620.1 | 2 | 3 | Remapped | NT_187620.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 2 | 4 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 1 | 4 | Remapped | NW_003315963.1 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 1 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 3 | 3 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 2 | 2 | Remapped | NW_009646206.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 1 | 2 | Remapped | NW_014040929.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 1 | 1 | Remapped | NT_187623.1 |
| NT_187626.1 | Chr21|NT_187626.1 | 0 | 1 | Remapped | NT_187626.1 |
| NT_187627.1 | Chr21|NT_187627.1 | 1 | 3 | Remapped | NT_187627.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 2 | 4 | Remapped | NT_187628.1 |
| NW_003315967.2 | Chr21|NW_003315967.2 | 1 | 4 | Remapped | NW_003315967.2 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 2 | 3 | Remapped | NW_003315968.2 |
| NW_003315969.2 | Chr21|NW_003315969.2 | 1 | 1 | Remapped | NW_003315969.2 |
| NW_003315970.2 | Chr21|NW_003315970.2 | 1 | 4 | Remapped | NW_003315970.2 |
| NT_187682.1 | Chr22|NT_187682.1 | 1 | 2 | Remapped | NT_187682.1 |
| NW_004504305.1 | Chr22|NW_004504305.1 | 1 | 1 | Remapped | NW_004504305.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 4 | 8 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 1 | 2 | Remapped | NT_187630.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 0 | 1 | Remapped | NT_187633.1 |
| NW_003315971.2 | Chr22|NW_003315971.2 | 1 | 1 | Remapped | NW_003315971.2 |
| NT_187667.1 | ChrX|NT_187667.1 | 4 | 7 | Remapped | NT_187667.1 |
| NW_017363820.1 | ChrX|NW_017363820.1 | 2 | 4 | Remapped | NW_017363820.1 |
| NT_187634.1 | ChrX|NT_187634.1 | 4 | 7 | Remapped | NT_187634.1 |
| NT_187635.1 | ChrX|NT_187635.1 | 1 | 3 | Remapped | NT_187635.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 341 | 568 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 313 | 543 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 281 | 468 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 280 | 495 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 272 | 479 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 240 | 422 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 239 | 399 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 213 | 363 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 137 | 232 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 164 | 261 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 216 | 347 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 180 | 319 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 160 | 277 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 127 | 202 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 101 | 174 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 133 | 195 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 115 | 183 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 105 | 169 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 97 | 151 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 66 | 112 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 64 | 117 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 67 | 103 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 250 | 388 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 9 | 9 | Remapped | NC_000024.9 |
| NT_167213.1 | Unplaced|NT_167213.1 | 0 | 1 | Remapped | NT_167213.1 |
| NW_003315907.1 | Chr1|NW_003315907.1 | 2 | 2 | Remapped | NW_003315907.1 |
| NW_003571030.1 | Chr1|NW_003571030.1 | 2 | 6 | Remapped | NW_003571030.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 4 | 5 | Remapped | NW_003871055.3 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 1 | 2 | Remapped | NW_003315908.1 |
| NW_003315909.1 | Chr2|NW_003315909.1 | 1 | 4 | Remapped | NW_003315909.1 |
| NW_003571033.2 | Chr2|NW_003571033.2 | 1 | 1 | Remapped | NW_003571033.2 |
| NW_003315910.1 | Chr3|NW_003315910.1 | 1 | 2 | Remapped | NW_003315910.1 |
| NW_003315913.1 | Chr3|NW_003315913.1 | 1 | 3 | Remapped | NW_003315913.1 |
| NT_167250.1 | Chr4|NT_167250.1 | 1 | 3 | Remapped | NT_167250.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 2 | 4 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 2 | 2 | Remapped | NW_003315915.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 1 | 2 | Remapped | NW_003571034.1 |
| NW_003571035.1 | Chr4|NW_003571035.1 | 2 | 4 | Remapped | NW_003571035.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 2 | 2 | Remapped | NW_004775427.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 7 | 12 | Remapped | NW_003315917.2 |
| NW_003315918.1 | Chr5|NW_003315918.1 | 2 | 4 | Remapped | NW_003315918.1 |
| NW_003315919.1 | Chr5|NW_003315919.1 | 1 | 3 | Remapped | NW_003315919.1 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 2 | 3 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 1 | 4 | Remapped | NW_003571036.1 |
| NW_003871061.1 | Chr5|NW_003871061.1 | 1 | 1 | Remapped | NW_003871061.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 1 | 4 | Remapped | NW_004775428.1 |
| NT_113891.2 | Chr6|NT_113891.2 | 15 | 21 | Remapped | NT_113891.2 |
| NT_167244.1 | Chr6|NT_167244.1 | 9 | 12 | Remapped | NT_167244.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 13 | 19 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 12 | 17 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 14 | 20 | Remapped | NT_167247.1 |
| NT_167248.1 | Chr6|NT_167248.1 | 15 | 21 | Remapped | NT_167248.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 15 | 22 | Remapped | NT_167249.1 |
| NW_003315921.1 | Chr6|NW_003315921.1 | 1 | 4 | Remapped | NW_003315921.1 |
| NW_003871063.1 | Chr6|NW_003871063.1 | 1 | 3 | Remapped | NW_003871063.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 1 | 3 | Remapped | NW_004070866.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 3 | 4 | Remapped | NW_004504300.1 |
| NW_003315922.2 | Chr7|NW_003315922.2 | 1 | 1 | Remapped | NW_003315922.2 |
| NW_003571037.1 | Chr7|NW_003571037.1 | 2 | 2 | Remapped | NW_003571037.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 2 | 5 | Remapped | NW_003571038.1 |
| NW_003571039.1 | Chr7|NW_003571039.1 | 2 | 6 | Remapped | NW_003571039.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 3 | 6 | Remapped | NW_003571040.1 |
| NW_003571041.1 | Chr7|NW_003571041.1 | 1 | 3 | Remapped | NW_003571041.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 6 | 6 | Remapped | NW_003871064.1 |
| NW_003871065.1 | Chr7|NW_003871065.1 | 2 | 6 | Remapped | NW_003871065.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 1 | 2 | Remapped | NW_004775430.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 1 | 1 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 3 | 8 | Remapped | NW_003571042.1 |
| NW_004775431.1 | Chr8|NW_004775431.1 | 2 | 2 | Remapped | NW_004775431.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 2 | 3 | Remapped | NW_003315931.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 2 | Remapped | NW_003315934.1 |
| NW_003315935.1 | Chr10|NW_003315935.1 | 1 | 1 | Remapped | NW_003315935.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 2 | 5 | Remapped | NW_003871068.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 1 | 3 | Remapped | NW_003871071.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 1 | 1 | Remapped | NW_004775432.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 1 | 1 | Remapped | NW_003315936.1 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 2 | 2 | Remapped | NW_003571045.1 |
| NW_003571046.1 | Chr11|NW_003571046.1 | 1 | 1 | Remapped | NW_003571046.1 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 2 | 3 | Remapped | NW_003871073.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 1 | 3 | Remapped | NW_003871074.1 |
| NW_003871076.1 | Chr11|NW_003871076.1 | 1 | 2 | Remapped | NW_003871076.1 |
| NW_003871079.1 | Chr11|NW_003871079.1 | 1 | 1 | Remapped | NW_003871079.1 |
| NW_003871081.1 | Chr11|NW_003871081.1 | 2 | 3 | Remapped | NW_003871081.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 2 | 5 | Remapped | NW_004070871.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 1 | 1 | Remapped | NW_003315938.1 |
| NW_003315939.1 | Chr12|NW_003315939.1 | 3 | 4 | Remapped | NW_003315939.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 2 | Remapped | NW_003315940.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 0 | 1 | Remapped | NW_003571050.1 |
| NW_003871083.2 | Chr12|NW_003871083.2 | 1 | 1 | Remapped | NW_003871083.2 |
| NW_004504303.2 | Chr12|NW_004504303.2 | 1 | 1 | Remapped | NW_004504303.2 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 4 | 8 | Remapped | NW_004166863.1 |
| NW_003315944.1 | Chr15|NW_003315944.1 | 1 | 2 | Remapped | NW_003315944.1 |
| NW_003871084.1 | Chr15|NW_003871084.1 | 1 | 1 | Remapped | NW_003871084.1 |
| NW_003315946.1 | Chr16|NW_003315946.1 | 1 | 3 | Remapped | NW_003315946.1 |
| NW_003871085.1 | Chr16|NW_003871085.1 | 1 | 1 | Remapped | NW_003871085.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 3 | 3 | Remapped | NT_167251.1 |
| NW_003315947.1 | Chr17|NW_003315947.1 | 3 | 4 | Remapped | NW_003315947.1 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 2 | 6 | Remapped | NW_003315949.1 |
| NW_003315953.1 | Chr17|NW_003315953.1 | 1 | 1 | Remapped | NW_003315953.1 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 2 | 5 | Remapped | NW_003315954.1 |
| NW_003571052.1 | Chr17|NW_003571052.1 | 1 | 2 | Remapped | NW_003571052.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 1 | 3 | Remapped | NW_004070872.2 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 1 | 1 | Remapped | NW_004775433.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 1 | 1 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 1 | 2 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 1 | 2 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 1 | 2 | Remapped | NW_003315959.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 2 | 4 | Remapped | NW_003315961.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 2 | 4 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 1 | 4 | Remapped | NW_003315963.1 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 1 | Remapped | NW_003315965.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 2 | 4 | Remapped | NW_003571053.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 1 | 1 | Remapped | NW_003571060.1 |
| NW_003571061.1 | Chr19|NW_003571061.1 | 1 | 1 | Remapped | NW_003571061.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 2 | 3 | Remapped | NW_004775434.1 |
| NW_004504304.1 | Chr20|NW_004504304.1 | 2 | 4 | Remapped | NW_004504304.1 |
| NW_003315967.1 | Chr21|NW_003315967.1 | 1 | 4 | Remapped | NW_003315967.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 2 | 3 | Remapped | NW_003315968.1 |
| NW_003315969.1 | Chr21|NW_003315969.1 | 1 | 1 | Remapped | NW_003315969.1 |
| NW_003315970.1 | Chr21|NW_003315970.1 | 1 | 4 | Remapped | NW_003315970.1 |
| NW_004070873.1 | Chr22|NW_004070873.1 | 1 | 1 | Remapped | NW_004070873.1 |
| NW_003571064.2 | ChrX|NW_003571064.2 | 1 | 3 | Remapped | NW_003571064.2 |
| NW_003871100.1 | ChrX|NW_003871100.1 | 3 | 4 | Remapped | NW_003871100.1 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 8 | 8 | Remapped | NW_003871103.3 |
| NW_004070877.1 | ChrX|NW_004070877.1 | 6 | 7 | Remapped | NW_004070877.1 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 2 | 3 | Remapped | NW_004070880.2 |
| NW_004070881.1 | ChrX|NW_004070881.1 | 3 | 5 | Remapped | NW_004070881.1 |
| NW_004070882.1 | ChrX|NW_004070882.1 | 2 | 2 | Remapped | NW_004070882.1 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 2 | 4 | Remapped | NW_004070885.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 3 | 4 | Remapped | NW_004070888.1 |
| NW_004070889.1 | ChrX|NW_004070889.1 | 1 | 1 | Remapped | NW_004070889.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 10 | 14 | Remapped | NW_004070890.2 |
| NW_004070891.1 | ChrX|NW_004070891.1 | 2 | 2 | Remapped | NW_004070891.1 |
| NW_004070892.1 | ChrX|NW_004070892.1 | 2 | 3 | Remapped | NW_004070892.1 |
| NW_004070893.1 | ChrX|NW_004070893.1 | 1 | 1 | Remapped | NW_004070893.1 |
| NW_004166866.1 | ChrX|NW_004166866.1 | 2 | 2 | Remapped | NW_004166866.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.8 | Chr1 | 343 | 574 | Submitted | NC_000001.8 |
| NC_000002.9 | Chr2 | 315 | 545 | Submitted | NC_000002.9 |
| NC_000003.9 | Chr3 | 281 | 468 | Submitted | NC_000003.9 |
| NC_000004.9 | Chr4 | 282 | 499 | Submitted | NC_000004.9 |
| NC_000005.8 | Chr5 | 272 | 479 | Submitted | NC_000005.8 |
| NC_000006.9 | Chr6 | 245 | 430 | Submitted | NC_000006.9 |
| NC_000007.11 | Chr7 | 240 | 400 | Submitted | NC_000007.11 |
| NC_000008.9 | Chr8 | 214 | 364 | Submitted | NC_000008.9 |
| NC_000009.9 | Chr9 | 139 | 235 | Submitted | NC_000009.9 |
| NC_000010.8 | Chr10 | 165 | 264 | Submitted | NC_000010.8 |
| NC_000011.8 | Chr11 | 217 | 351 | Submitted | NC_000011.8 |
| NC_000012.9 | Chr12 | 180 | 319 | Submitted | NC_000012.9 |
| NC_000013.9 | Chr13 | 160 | 277 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 127 | 202 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 102 | 176 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 133 | 195 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 119 | 191 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 105 | 169 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 99 | 153 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 66 | 112 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 64 | 117 | Submitted | NC_000021.7 |
| NC_000022.8 | Chr22 | 68 | 104 | Submitted | NC_000022.8 |
| NC_000023.8 | ChrX | 252 | 391 | Submitted | NC_000023.8 |
| NC_000024.7 | ChrY | 9 | 9 | Submitted | NC_000024.7 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.8 | Chr1 | 343 | 327 | 4 | 5 | 1 | 6 | 574 | 545 | 8 | 12 | 2 | 7 |
| NC_000002.9 | Chr2 | 315 | 299 | 2 | 8 | 2 | 4 | 545 | 524 | 2 | 9 | 2 | 8 |
| NC_000003.9 | Chr3 | 281 | 276 | 2 | 1 | 0 | 2 | 468 | 460 | 2 | 1 | 0 | 5 |
| NC_000004.9 | Chr4 | 282 | 267 | 4 | 1 | 1 | 9 | 499 | 476 | 5 | 4 | 0 | 14 |
| NC_000005.8 | Chr5 | 272 | 255 | 1 | 1 | 0 | 15 | 479 | 443 | 2 | 3 | 0 | 31 |
| NC_000006.9 | Chr6 | 245 | 215 | 3 | 7 | 2 | 18 | 430 | 376 | 7 | 13 | 4 | 30 |
| NC_000007.11 | Chr7 | 240 | 218 | 2 | 1 | 0 | 19 | 400 | 359 | 2 | 3 | 0 | 36 |
| NC_000008.9 | Chr8 | 214 | 203 | 4 | 2 | 0 | 5 | 364 | 342 | 8 | 4 | 0 | 10 |
| NC_000009.9 | Chr9 | 139 | 127 | 3 | 5 | 2 | 2 | 235 | 218 | 5 | 6 | 3 | 3 |
| NC_000010.8 | Chr10 | 165 | 154 | 2 | 2 | 1 | 6 | 264 | 240 | 2 | 7 | 3 | 12 |
| NC_000011.8 | Chr11 | 217 | 203 | 1 | 1 | 0 | 12 | 351 | 329 | 1 | 4 | 0 | 17 |
| NC_000012.9 | Chr12 | 180 | 173 | 0 | 0 | 0 | 7 | 319 | 309 | 0 | 0 | 0 | 10 |
| NC_000013.9 | Chr13 | 160 | 160 | 0 | 0 | 0 | 0 | 277 | 277 | 0 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 127 | 121 | 1 | 0 | 0 | 5 | 202 | 189 | 4 | 0 | 0 | 9 |
| NC_000015.8 | Chr15 | 102 | 92 | 3 | 3 | 1 | 3 | 176 | 160 | 5 | 4 | 2 | 5 |
| NC_000016.8 | Chr16 | 133 | 131 | 0 | 0 | 0 | 2 | 195 | 191 | 0 | 0 | 0 | 4 |
| NC_000017.9 | Chr17 | 119 | 103 | 1 | 6 | 0 | 9 | 191 | 162 | 3 | 10 | 0 | 16 |
| NC_000018.8 | Chr18 | 105 | 99 | 0 | 0 | 0 | 6 | 169 | 158 | 0 | 0 | 0 | 11 |
| NC_000019.8 | Chr19 | 99 | 87 | 0 | 4 | 0 | 8 | 153 | 132 | 0 | 5 | 0 | 16 |
| NC_000020.9 | Chr20 | 66 | 64 | 0 | 0 | 0 | 2 | 112 | 108 | 0 | 0 | 0 | 4 |
| NC_000021.7 | Chr21 | 64 | 59 | 0 | 0 | 0 | 5 | 117 | 105 | 0 | 0 | 0 | 12 |
| NC_000022.8 | Chr22 | 68 | 64 | 1 | 2 | 1 | 0 | 104 | 98 | 1 | 4 | 1 | 0 |
| NC_000023.8 | ChrX | 252 | 203 | 0 | 3 | 0 | 46 | 391 | 325 | 0 | 6 | 0 | 60 |
| NC_000024.7 | ChrY | 9 | 9 | 0 | 0 | 0 | 0 | 9 | 9 | 0 | 0 | 0 | 0 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.8 | Chr1 | 343 | 292 | 8 | 14 | 3 | 26 | 574 | 480 | 14 | 26 | 4 | 50 |
| NC_000002.9 | Chr2 | 315 | 286 | 4 | 7 | 3 | 15 | 545 | 498 | 10 | 7 | 3 | 27 |
| NC_000003.9 | Chr3 | 281 | 255 | 3 | 2 | 1 | 20 | 468 | 426 | 4 | 4 | 1 | 33 |
| NC_000004.9 | Chr4 | 282 | 255 | 8 | 1 | 1 | 17 | 499 | 452 | 11 | 4 | 0 | 32 |
| NC_000005.8 | Chr5 | 272 | 243 | 5 | 1 | 0 | 23 | 479 | 422 | 10 | 3 | 0 | 44 |
| NC_000006.9 | Chr6 | 245 | 185 | 10 | 13 | 4 | 33 | 430 | 327 | 14 | 25 | 8 | 56 |
| NC_000007.11 | Chr7 | 240 | 206 | 12 | 6 | 1 | 15 | 400 | 341 | 20 | 15 | 3 | 21 |
| NC_000008.9 | Chr8 | 214 | 172 | 8 | 4 | 1 | 29 | 364 | 287 | 13 | 5 | 3 | 56 |
| NC_000009.9 | Chr9 | 139 | 123 | 4 | 1 | 2 | 9 | 235 | 211 | 5 | 4 | 3 | 12 |
| NC_000010.8 | Chr10 | 165 | 153 | 1 | 3 | 4 | 4 | 264 | 239 | 2 | 10 | 7 | 6 |
| NC_000011.8 | Chr11 | 217 | 194 | 7 | 1 | 1 | 14 | 351 | 312 | 7 | 1 | 6 | 25 |
| NC_000012.9 | Chr12 | 180 | 154 | 3 | 1 | 0 | 22 | 319 | 271 | 4 | 2 | 0 | 42 |
| NC_000013.9 | Chr13 | 160 | 149 | 0 | 1 | 0 | 10 | 277 | 258 | 0 | 1 | 0 | 18 |
| NC_000014.7 | Chr14 | 127 | 107 | 6 | 1 | 3 | 10 | 202 | 167 | 12 | 3 | 3 | 17 |
| NC_000015.8 | Chr15 | 102 | 85 | 5 | 4 | 1 | 7 | 176 | 148 | 6 | 7 | 2 | 13 |
| NC_000016.8 | Chr16 | 133 | 113 | 1 | 2 | 0 | 17 | 195 | 161 | 1 | 3 | 0 | 30 |
| NC_000017.9 | Chr17 | 119 | 91 | 5 | 8 | 0 | 15 | 191 | 135 | 6 | 18 | 0 | 32 |
| NC_000018.8 | Chr18 | 105 | 90 | 1 | 1 | 0 | 13 | 169 | 142 | 1 | 3 | 0 | 23 |
| NC_000019.8 | Chr19 | 99 | 79 | 4 | 3 | 0 | 13 | 153 | 120 | 4 | 6 | 0 | 23 |
| NC_000020.9 | Chr20 | 66 | 58 | 4 | 3 | 0 | 1 | 112 | 100 | 4 | 7 | 0 | 1 |
| NC_000021.7 | Chr21 | 64 | 50 | 6 | 0 | 0 | 8 | 117 | 89 | 8 | 0 | 0 | 20 |
| NC_000022.8 | Chr22 | 68 | 47 | 10 | 2 | 3 | 6 | 104 | 72 | 14 | 3 | 3 | 12 |
| NC_000023.8 | ChrX | 252 | 208 | 26 | 10 | 1 | 7 | 391 | 327 | 34 | 13 | 3 | 14 |
| NC_000024.7 | ChrY | 9 | 9 | 0 | 0 | 0 | 0 | 9 | 9 | 0 | 0 | 0 | 0 |
Samplesets
Number of Samplesets: 1
- Name:
- OPMAP4
- Description:
- Two HapMap individuals, one PDR individual and one CHM cell line.
- Size:
- 4
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- See phenotypes on samples
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Age | Subject Phenotype |
|---|---|---|---|---|---|---|
| GM10860 | B-Lymphocyte | NA10860 | Male | UTAH/MORMON | 50 Years | Not reported |
| GM15510 | Cell-culture | GM15510 | Female | health | ||
| GM18994 | B-Lymphocyte | NA18994 | Male | JAPANESE | Not reported | |
| CHM | Cell-culture | CHM | Female | hydatidiform mole |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Data | Number of Variant Calls |
|---|---|---|---|---|---|---|
| 1 | Discovery | Optical mapping | Optical mapping | Optical Mapping | 7,024 | |
| 2 | Validation | Sequencing | Paired-end mapping | 79 | ||
| 3 | Validation | Sequencing | One end anchored assembly | 4 | ||
| 4 | Validation | Sequencing | Paired-end mapping | 82 | ||
| 5 | Validation | BAC aCGH | Probe signal intensity | 29 | ||
| 6 | Validation | Oligo aCGH | Probe signal intensity | [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array, [Mapping250K_Sty] Affymetrix Mapping 250K Sty2 SNP Array | GEO | 7 |
| 7 | Validation | Oligo aCGH | Probe signal intensity | 6 | ||
| 8 | Validation | Oligo aCGH | Probe signal intensity | 135 | ||
| 9 | Validation | Oligo aCGH | Probe signal intensity | 101 |
Validations
| Experiment ID | Method | Analysis | Platform | Data | Number of Variant Calls Validated |
|---|---|---|---|---|---|
| 2 | Sequencing | Paired-end mapping | 79 | ||
| 3 | Sequencing | One end anchored assembly | 4 | ||
| 4 | Sequencing | Paired-end mapping | 82 | ||
| 5 | BAC aCGH | Probe signal intensity | 29 | ||
| 6 | Oligo aCGH | Probe signal intensity | [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array, [Mapping250K_Sty] Affymetrix Mapping 250K Sty2 SNP Array | GEO | 7 |
| 7 | Oligo aCGH | Probe signal intensity | 6 | ||
| 8 | Oligo aCGH | Probe signal intensity | 135 | ||
| 9 | Oligo aCGH | Probe signal intensity | 101 |