nstd67 (Park et al. 2010)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Database of Genomic Variants
- Description:
- Copy number variants (CNVs) account for the majority of human genomic diversity in terms of base coverage. Here, we have developed and applied a new method to combine high-resolution array comparative genomic hybridization (CGH) data with whole-genome DNA sequencing data to obtain a comprehensive catalog of common CNVs in Asian individuals. The genomes of 30 individuals from three Asian populations (Korean, Chinese and Japanese) were interrogated with an ultra-high-resolution array CGH platform containing 24 million probes. Whole-genome sequencing data from a reference genome (NA10851, with 28.3× coverage) and two Asian genomes (AK1, with 27.8× coverage and AK2, with 32.0× coverage) were used to transform the relative copy number information obtained from array CGH experiments into absolute copy number values. We discovered 5,177 CNVs, of which 3,547 were putative Asian-specific CNVs. These common CNVs in Asian populations will be a useful resource for subsequent genetic studies in these populations, and the new method of calling absolute CNVs will be essential for applying CNV data to personalized medicine. See Variant Summary counts for nstd67 in dbVar Variant Summary.
- Publication(s):
- Park et al. 2010
Detailed Information: Download 7950 Variant Regions, Download 20099 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 652 | 1,857 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 563 | 1,583 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 433 | 1,269 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 449 | 1,290 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 408 | 1,122 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 507 | 1,190 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 416 | 1,079 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 337 | 859 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 350 | 816 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 425 | 1,004 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 445 | 1,071 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 363 | 1,015 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 244 | 676 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 321 | 639 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 242 | 682 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 337 | 701 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 275 | 565 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 175 | 507 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 276 | 565 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 135 | 313 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 98 | 220 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 371 | 613 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 52 | 159 | Remapped | NC_000023.11 |
| NT_187364.1 | Chr1|NT_187364.1 | 2 | 3 | Remapped | NT_187364.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 6 | 6 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 1 | 1 | Remapped | NT_187516.1 |
| NT_187517.1 | Chr1|NT_187517.1 | 3 | 6 | Remapped | NT_187517.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 1 | 1 | Remapped | NT_187518.1 |
| NT_187521.1 | Chr1|NT_187521.1 | 3 | 29 | Remapped | NT_187521.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 1 | 1 | Remapped | NT_187646.1 |
| NW_009646195.1 | Chr1|NW_009646195.1 | 1 | 1 | Remapped | NW_009646195.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 2 | 18 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 3 | 11 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 6 | 9 | Remapped | NW_012132914.1 |
| NW_014040926.1 | Chr1|NW_014040926.1 | 2 | 7 | Remapped | NW_014040926.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 5 | 21 | Remapped | NW_017852928.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 4 | 31 | Remapped | NW_018654707.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 4 | 15 | Remapped | NT_187524.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 1 | 2 | Remapped | NT_187527.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 10 | 30 | Remapped | NT_187529.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 4 | 15 | Remapped | NT_187648.1 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 1 | 1 | Remapped | NW_011332689.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 20 | 26 | Remapped | NW_012132915.1 |
| NW_015495299.1 | Chr2|NW_015495299.1 | 2 | 2 | Remapped | NW_015495299.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 4 | 7 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 4 | 7 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 4 | 7 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 4 | 7 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 4 | 7 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 4 | 7 | Remapped | NT_187532.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 8 | 18 | Remapped | NT_187537.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 4 | 7 | Remapped | NT_187649.1 |
| NW_003871060.2 | Chr3|NW_003871060.2 | 2 | 2 | Remapped | NW_003871060.2 |
| NW_009646197.1 | Chr3|NW_009646197.1 | 1 | 1 | Remapped | NW_009646197.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 1 | 1 | Remapped | NW_011332691.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 2 | 11 | Remapped | NW_019805489.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 1 | 9 | Remapped | NT_187545.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 5 | 16 | Remapped | NW_003315915.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 2 | 2 | Remapped | NW_017363814.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 1 | 1 | Remapped | NT_187548.1 |
| NT_187549.1 | Chr5|NT_187549.1 | 1 | 1 | Remapped | NT_187549.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 1 | 1 | Remapped | NT_187550.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 1 | 1 | Remapped | NW_003571036.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 3 | 22 | Remapped | NW_009646199.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 1 | 2 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 6 | 7 | Remapped | NW_016107298.1 |
| NT_187692.1 | Chr6|NT_187692.1 | 7 | 8 | Remapped | NT_187692.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 52 | 82 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 56 | 76 | Remapped | NT_167247.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 71 | 116 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 63 | 88 | Remapped | NT_167245.2 |
| NT_167244.2 | Chr6|NT_167244.2 | 25 | 37 | Remapped | NT_167244.2 |
| NT_187553.1 | Chr6|NT_187553.1 | 4 | 4 | Remapped | NT_187553.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 10 | 17 | Remapped | NT_187558.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 1 | 1 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 30 | 80 | Remapped | NT_187562.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 10 | 17 | Remapped | NT_187653.1 |
| NW_017852930.1 | Chr7|NW_017852930.1 | 1 | 1 | Remapped | NW_017852930.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 3 | 3 | Remapped | NW_018654714.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 1 | 1 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 1 | 1 | Remapped | NT_187566.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 1 | 1 | Remapped | NT_187568.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 4 | 10 | Remapped | NT_187570.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 10 | 12 | Remapped | NT_187571.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 1 | 1 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 1 | 1 | Remapped | NT_187574.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 31 | 59 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 1 | 1 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 3 | 30 | Remapped | NT_187654.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 1 | 1 | Remapped | NT_187655.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 1 | 6 | Remapped | NW_017852931.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 2 | 2 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 18 | 36 | Remapped | NW_018654717.1 |
| NT_187578.1 | Chr9|NT_187578.1 | 1 | 2 | Remapped | NT_187578.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 2 | 2 | Remapped | NW_003315930.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 2 | 2 | Remapped | NW_009646201.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 2 | 21 | Remapped | NW_003315934.1 |
| NW_003315935.1 | Chr10|NW_003315935.1 | 1 | 1 | Remapped | NW_003315935.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 5 | 21 | Remapped | NW_013171806.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 6 | 32 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 5 | 31 | Remapped | NT_187656.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 5 | 22 | Remapped | NT_187581.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 2 | 3 | Remapped | NT_187583.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 2 | 2 | Remapped | NT_187585.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 4 | 4 | Remapped | NT_187586.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 1 | 1 | Remapped | NW_003871074.1 |
| NW_009646203.1 | Chr11|NW_009646203.1 | 1 | 1 | Remapped | NW_009646203.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 2 | 3 | Remapped | NW_011332695.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 7 | 33 | Remapped | NW_015148966.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 3 | 3 | Remapped | NW_019805495.1 |
| NW_019805496.1 | Chr11|NW_019805496.1 | 3 | 3 | Remapped | NW_019805496.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 3 | 3 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 9 | 15 | Remapped | NT_187587.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 1 | 1 | Remapped | NW_003315938.1 |
| NW_003315941.1 | Chr12|NW_003315941.1 | 1 | 1 | Remapped | NW_003315941.1 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 4 | 33 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 1 | 1 | Remapped | NW_003571050.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 1 | 1 | Remapped | NW_009646204.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 2 | 9 | Remapped | NW_011332696.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 11 | 31 | Remapped | NW_018654718.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 1 | 10 | Remapped | NW_019805499.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 1 | 1 | Remapped | NW_011332698.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 2 | 2 | Remapped | NW_011332699.1 |
| NW_011332700.1 | Chr13|NW_011332700.1 | 1 | 1 | Remapped | NW_011332700.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 3 | 24 | Remapped | NW_013171811.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 81 | 116 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 6 | 25 | Remapped | NT_187601.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 2 | 2 | Remapped | NW_018654722.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 18 | 24 | Remapped | NT_187660.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 5 | 20 | Remapped | NT_187605.1 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 18 | 24 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 8 | 28 | Remapped | NT_187607.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 2 | 2 | Remapped | NW_003315945.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 1 | 1 | Remapped | NW_012132921.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 1 | 1 | Remapped | NW_017852933.1 |
| NW_019805500.1 | Chr16|NW_019805500.1 | 4 | 7 | Remapped | NW_019805500.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 9 | 12 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 3 | 23 | Remapped | NT_187662.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 2 | 26 | Remapped | NW_003871093.1 |
| NT_187384.1 | Chr17|NT_187384.1 | 4 | 15 | Remapped | NT_187384.1 |
| NT_187611.1 | Chr17|NT_187611.1 | 2 | 2 | Remapped | NT_187611.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 7 | 8 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 2 | 2 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 20 | 37 | Remapped | NT_187614.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 4 | 25 | Remapped | NW_003315952.3 |
| NW_016107299.1 | Chr17|NW_016107299.1 | 2 | 2 | Remapped | NW_016107299.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 1 | 1 | Remapped | NW_017363818.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 2 | 2 | Remapped | NW_017363819.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 5 | 7 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 14 | 14 | Remapped | NT_187666.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 1 | 1 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 5 | 7 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 3 | 19 | Remapped | NW_003315959.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 14 | 14 | Remapped | NW_003315961.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 14 | 50 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 7 | 41 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 1 | 6 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 1 | 6 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 1 | 6 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 11 | 18 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 1 | 6 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 5 | 39 | Remapped | NW_003571055.2 |
| NT_187621.1 | Chr19|NT_187621.1 | 1 | 1 | Remapped | NT_187621.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 2 | 4 | Remapped | NW_003315963.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 12 | 46 | Remapped | NW_003571054.1 |
| NT_187626.1 | Chr21|NT_187626.1 | 1 | 1 | Remapped | NT_187626.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 1 | 1 | Remapped | NT_187628.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 6 | 24 | Remapped | NW_003315968.2 |
| NT_187682.1 | Chr22|NT_187682.1 | 1 | 22 | Remapped | NT_187682.1 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 11 | 11 | Remapped | NW_015148969.1 |
| NT_187387.1 | Chr22|NT_187387.1 | 2 | 3 | Remapped | NT_187387.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 4 | 5 | Remapped | NT_187629.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 5 | 6 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 25 | 54 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 1 | 11 | Remapped | NW_003315972.2 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 655 | 1,860 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 563 | 1,583 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 433 | 1,269 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 449 | 1,290 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 408 | 1,122 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 507 | 1,190 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 438 | 1,117 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 342 | 889 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 349 | 814 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 425 | 1,004 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 445 | 1,071 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 359 | 982 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 244 | 676 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 326 | 675 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 242 | 682 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 337 | 701 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 268 | 538 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 175 | 507 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 278 | 591 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 135 | 313 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 98 | 220 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 395 | 731 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 58 | 169 | Remapped | NC_000023.10 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 18 | 19 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 1 | 30 | Remapped | NW_003871056.3 |
| NW_003871057.1 | Chr1|NW_003871057.1 | 1 | 1 | Remapped | NW_003871057.1 |
| NW_003571032.1 | Chr2|NW_003571032.1 | 1 | 1 | Remapped | NW_003571032.1 |
| NW_003871060.1 | Chr3|NW_003871060.1 | 2 | 2 | Remapped | NW_003871060.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 5 | 16 | Remapped | NW_003315915.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 2 | 2 | Remapped | NW_003571034.1 |
| NW_003571035.1 | Chr4|NW_003571035.1 | 1 | 1 | Remapped | NW_003571035.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 1 | 1 | Remapped | NW_004775427.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 1 | 1 | Remapped | NW_003571036.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 26 | 61 | Remapped | NW_004775428.1 |
| NT_167244.1 | Chr6|NT_167244.1 | 25 | 37 | Remapped | NT_167244.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 69 | 104 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 59 | 92 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 56 | 76 | Remapped | NT_167247.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 73 | 118 | Remapped | NT_167249.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 5 | 12 | Remapped | NW_004070866.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 2 | 2 | Remapped | NW_004504300.1 |
| NW_003571037.1 | Chr7|NW_003571037.1 | 1 | 1 | Remapped | NW_003571037.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 1 | 1 | Remapped | NW_003571038.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 30 | 80 | Remapped | NW_003571040.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 11 | 40 | Remapped | NW_003871064.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 1 | 1 | Remapped | NW_004775430.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 22 | 27 | Remapped | NW_003315923.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 2 | 2 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 10 | 35 | Remapped | NW_003571042.1 |
| NW_003871066.2 | Chr8|NW_003871066.2 | 1 | 1 | Remapped | NW_003871066.2 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 2 | 2 | Remapped | NW_003315925.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 2 | 2 | Remapped | NW_003315930.1 |
| NW_004070868.1 | Chr9|NW_004070868.1 | 1 | 1 | Remapped | NW_004070868.1 |
| NW_004070869.1 | Chr9|NW_004070869.1 | 3 | 3 | Remapped | NW_004070869.1 |
| NW_004504301.1 | Chr9|NW_004504301.1 | 1 | 1 | Remapped | NW_004504301.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 2 | 21 | Remapped | NW_003315934.1 |
| NW_003315935.1 | Chr10|NW_003315935.1 | 1 | 1 | Remapped | NW_003315935.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 3 | 3 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 5 | 14 | Remapped | NW_003871068.1 |
| NW_003871069.1 | Chr10|NW_003871069.1 | 1 | 1 | Remapped | NW_003871069.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 8 | 8 | Remapped | NW_003871071.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 3 | 4 | Remapped | NW_004775432.1 |
| NW_003571046.1 | Chr11|NW_003571046.1 | 1 | 2 | Remapped | NW_003571046.1 |
| NW_003871072.2 | Chr11|NW_003871072.2 | 1 | 1 | Remapped | NW_003871072.2 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 1 | 1 | Remapped | NW_003871074.1 |
| NW_003871076.1 | Chr11|NW_003871076.1 | 1 | 1 | Remapped | NW_003871076.1 |
| NW_003871077.1 | Chr11|NW_003871077.1 | 1 | 8 | Remapped | NW_003871077.1 |
| NW_003871079.1 | Chr11|NW_003871079.1 | 1 | 1 | Remapped | NW_003871079.1 |
| NW_003871081.1 | Chr11|NW_003871081.1 | 2 | 2 | Remapped | NW_003871081.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 2 | 2 | Remapped | NW_004070871.1 |
| NW_003315937.1 | Chr12|NW_003315937.1 | 2 | 3 | Remapped | NW_003315937.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 1 | 1 | Remapped | NW_003315938.1 |
| NW_003315941.1 | Chr12|NW_003315941.1 | 1 | 1 | Remapped | NW_003315941.1 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 4 | 33 | Remapped | NW_003571048.1 |
| NW_003871083.2 | Chr12|NW_003871083.2 | 1 | 1 | Remapped | NW_003871083.2 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 78 | 109 | Remapped | NW_004166863.1 |
| NW_003871084.1 | Chr15|NW_003871084.1 | 2 | 25 | Remapped | NW_003871084.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 2 | 2 | Remapped | NW_003315945.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 3 | 3 | Remapped | NT_167251.1 |
| NW_003315947.1 | Chr17|NW_003315947.1 | 1 | 1 | Remapped | NW_003315947.1 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 9 | 12 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 1 | 1 | Remapped | NW_003315950.2 |
| NW_003571052.1 | Chr17|NW_003571052.1 | 1 | 1 | Remapped | NW_003571052.1 |
| NW_003871087.1 | Chr17|NW_003871087.1 | 2 | 2 | Remapped | NW_003871087.1 |
| NW_003871088.1 | Chr17|NW_003871088.1 | 1 | 1 | Remapped | NW_003871088.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 2 | 26 | Remapped | NW_003871093.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 4 | 25 | Remapped | NW_004070872.2 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 6 | 8 | Remapped | NW_004775433.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 1 | 1 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 5 | 7 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 3 | 19 | Remapped | NW_003315959.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 14 | 14 | Remapped | NW_003315961.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 2 | 4 | Remapped | NW_003315963.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 14 | 22 | Remapped | NW_003571053.2 |
| NW_003571061.1 | Chr19|NW_003571061.1 | 1 | 3 | Remapped | NW_003571061.1 |
| NW_003871094.1 | Chr19|NW_003871094.1 | 5 | 15 | Remapped | NW_003871094.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 1 | 6 | Remapped | NW_004166865.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 6 | 24 | Remapped | NW_003315968.1 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 1 | 1 | Remapped | NW_004775435.1 |
| NW_003315972.1 | Chr22|NW_003315972.1 | 1 | 11 | Remapped | NW_003315972.1 |
| NW_003871096.1 | Chr22|NW_003871096.1 | 1 | 1 | Remapped | NW_003871096.1 |
| NW_003871098.1 | ChrX|NW_003871098.1 | 1 | 1 | Remapped | NW_003871098.1 |
| NW_003871101.3 | ChrX|NW_003871101.3 | 1 | 19 | Remapped | NW_003871101.3 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 8 | 24 | Remapped | NW_003871103.3 |
| NW_004070882.1 | ChrX|NW_004070882.1 | 4 | 4 | Remapped | NW_004070882.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 1 | 2 | Remapped | NW_004070888.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 2 | 2 | Remapped | NW_004070890.2 |
| NW_004070891.1 | ChrX|NW_004070891.1 | 2 | 4 | Remapped | NW_004070891.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.9 | Chr1 | 656 | 1,861 | Submitted | NC_000001.9 |
| NC_000002.10 | Chr2 | 563 | 1,583 | Submitted | NC_000002.10 |
| NC_000003.10 | Chr3 | 433 | 1,269 | Submitted | NC_000003.10 |
| NC_000004.10 | Chr4 | 450 | 1,292 | Submitted | NC_000004.10 |
| NC_000005.8 | Chr5 | 408 | 1,122 | Submitted | NC_000005.8 |
| NC_000006.10 | Chr6 | 507 | 1,190 | Submitted | NC_000006.10 |
| NC_000007.12 | Chr7 | 444 | 1,150 | Submitted | NC_000007.12 |
| NC_000008.9 | Chr8 | 342 | 889 | Submitted | NC_000008.9 |
| NC_000009.10 | Chr9 | 349 | 814 | Submitted | NC_000009.10 |
| NC_000010.9 | Chr10 | 425 | 1,004 | Submitted | NC_000010.9 |
| NC_000011.8 | Chr11 | 445 | 1,071 | Submitted | NC_000011.8 |
| NC_000012.10 | Chr12 | 363 | 1,015 | Submitted | NC_000012.10 |
| NC_000013.9 | Chr13 | 244 | 676 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 326 | 675 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 242 | 682 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 337 | 701 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 276 | 568 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 175 | 507 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 279 | 597 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 135 | 313 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 98 | 220 | Submitted | NC_000021.7 |
| NC_000022.9 | Chr22 | 395 | 731 | Submitted | NC_000022.9 |
| NC_000023.9 | ChrX | 58 | 169 | Submitted | NC_000023.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 656 | 642 | 3 | 2 | 0 | 9 | 1,861 | 1,789 | 3 | 31 | 0 | 38 |
| NC_000002.10 | Chr2 | 563 | 548 | 1 | 1 | 0 | 13 | 1,583 | 1,565 | 1 | 1 | 0 | 16 |
| NC_000003.10 | Chr3 | 433 | 429 | 2 | 0 | 0 | 2 | 1,269 | 1,262 | 5 | 0 | 0 | 2 |
| NC_000004.10 | Chr4 | 450 | 438 | 2 | 0 | 1 | 9 | 1,292 | 1,268 | 2 | 0 | 2 | 20 |
| NC_000005.8 | Chr5 | 408 | 381 | 0 | 0 | 0 | 27 | 1,122 | 1,060 | 0 | 0 | 0 | 62 |
| NC_000006.10 | Chr6 | 507 | 390 | 1 | 0 | 0 | 116 | 1,190 | 1,002 | 1 | 0 | 0 | 187 |
| NC_000007.12 | Chr7 | 444 | 396 | 8 | 0 | 1 | 39 | 1,150 | 1,019 | 39 | 0 | 1 | 91 |
| NC_000008.9 | Chr8 | 342 | 304 | 0 | 3 | 0 | 35 | 889 | 821 | 0 | 3 | 0 | 65 |
| NC_000009.10 | Chr9 | 349 | 338 | 2 | 0 | 0 | 9 | 814 | 803 | 2 | 0 | 0 | 9 |
| NC_000010.9 | Chr10 | 425 | 395 | 2 | 5 | 0 | 23 | 1,004 | 899 | 3 | 50 | 0 | 52 |
| NC_000011.8 | Chr11 | 445 | 433 | 1 | 1 | 0 | 10 | 1,071 | 1,051 | 1 | 1 | 0 | 18 |
| NC_000012.10 | Chr12 | 363 | 356 | 0 | 2 | 0 | 5 | 1,015 | 978 | 0 | 31 | 0 | 6 |
| NC_000013.9 | Chr13 | 244 | 243 | 1 | 0 | 0 | 0 | 676 | 675 | 1 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 326 | 241 | 3 | 4 | 0 | 78 | 675 | 553 | 9 | 4 | 0 | 109 |
| NC_000015.8 | Chr15 | 242 | 235 | 2 | 3 | 0 | 2 | 682 | 640 | 2 | 15 | 0 | 25 |
| NC_000016.8 | Chr16 | 337 | 335 | 0 | 0 | 0 | 2 | 701 | 699 | 0 | 0 | 0 | 2 |
| NC_000017.9 | Chr17 | 276 | 242 | 4 | 4 | 3 | 23 | 568 | 489 | 21 | 4 | 4 | 50 |
| NC_000018.8 | Chr18 | 175 | 151 | 1 | 0 | 0 | 23 | 507 | 465 | 1 | 0 | 0 | 41 |
| NC_000019.8 | Chr19 | 279 | 255 | 2 | 0 | 0 | 22 | 597 | 551 | 2 | 0 | 0 | 44 |
| NC_000020.9 | Chr20 | 135 | 134 | 1 | 0 | 0 | 0 | 313 | 312 | 1 | 0 | 0 | 0 |
| NC_000021.7 | Chr21 | 98 | 91 | 0 | 0 | 0 | 7 | 220 | 195 | 0 | 0 | 0 | 25 |
| NC_000022.9 | Chr22 | 395 | 386 | 5 | 2 | 0 | 2 | 731 | 712 | 5 | 2 | 0 | 12 |
| NC_000023.9 | ChrX | 58 | 39 | 0 | 0 | 0 | 19 | 169 | 113 | 0 | 0 | 0 | 56 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 656 | 589 | 23 | 3 | 4 | 37 | 1,861 | 1,555 | 132 | 29 | 4 | 141 |
| NC_000002.10 | Chr2 | 563 | 481 | 44 | 0 | 0 | 38 | 1,583 | 1,413 | 94 | 0 | 0 | 76 |
| NC_000003.10 | Chr3 | 433 | 414 | 1 | 0 | 0 | 18 | 1,269 | 1,228 | 1 | 0 | 0 | 40 |
| NC_000004.10 | Chr4 | 450 | 434 | 5 | 0 | 1 | 10 | 1,292 | 1,238 | 5 | 0 | 2 | 47 |
| NC_000005.8 | Chr5 | 408 | 392 | 4 | 0 | 0 | 12 | 1,122 | 1,103 | 4 | 0 | 0 | 15 |
| NC_000006.10 | Chr6 | 507 | 392 | 3 | 2 | 0 | 110 | 1,190 | 1,005 | 4 | 6 | 0 | 175 |
| NC_000007.12 | Chr7 | 444 | 381 | 16 | 12 | 9 | 26 | 1,150 | 1,009 | 33 | 55 | 11 | 42 |
| NC_000008.9 | Chr8 | 342 | 261 | 7 | 5 | 0 | 69 | 889 | 746 | 8 | 5 | 0 | 130 |
| NC_000009.10 | Chr9 | 349 | 340 | 1 | 0 | 0 | 8 | 814 | 803 | 1 | 0 | 0 | 10 |
| NC_000010.9 | Chr10 | 425 | 409 | 8 | 0 | 0 | 8 | 1,004 | 936 | 25 | 0 | 0 | 43 |
| NC_000011.8 | Chr11 | 445 | 405 | 11 | 0 | 0 | 29 | 1,071 | 986 | 12 | 0 | 0 | 73 |
| NC_000012.10 | Chr12 | 363 | 329 | 0 | 1 | 0 | 33 | 1,015 | 910 | 0 | 1 | 0 | 104 |
| NC_000013.9 | Chr13 | 244 | 238 | 1 | 0 | 0 | 5 | 676 | 649 | 1 | 0 | 0 | 26 |
| NC_000014.7 | Chr14 | 326 | 201 | 28 | 3 | 5 | 89 | 675 | 462 | 31 | 3 | 36 | 143 |
| NC_000015.8 | Chr15 | 242 | 213 | 3 | 3 | 0 | 23 | 682 | 620 | 3 | 15 | 0 | 44 |
| NC_000016.8 | Chr16 | 337 | 320 | 1 | 0 | 0 | 16 | 701 | 661 | 1 | 0 | 0 | 39 |
| NC_000017.9 | Chr17 | 276 | 229 | 6 | 0 | 0 | 41 | 568 | 443 | 23 | 0 | 0 | 102 |
| NC_000018.8 | Chr18 | 175 | 150 | 2 | 0 | 0 | 23 | 507 | 464 | 2 | 0 | 0 | 41 |
| NC_000019.8 | Chr19 | 279 | 255 | 7 | 0 | 0 | 17 | 597 | 527 | 15 | 0 | 0 | 55 |
| NC_000020.9 | Chr20 | 135 | 134 | 1 | 0 | 0 | 0 | 313 | 312 | 1 | 0 | 0 | 0 |
| NC_000021.7 | Chr21 | 98 | 86 | 2 | 0 | 0 | 10 | 220 | 190 | 2 | 0 | 0 | 28 |
| NC_000022.9 | Chr22 | 395 | 311 | 51 | 3 | 5 | 25 | 731 | 555 | 84 | 3 | 51 | 38 |
| NC_000023.9 | ChrX | 58 | 48 | 4 | 0 | 6 | 0 | 169 | 155 | 4 | 0 | 10 | 0 |
Samplesets
Number of Samplesets: 1
- Description:
- 30 individuals from three Asian populations (Korean, Chinese and Japanese)
- Size:
- 30
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|---|
| NA18566 | B-Lymphocyte | NA18566 | Female | CHB | Not reported |
| AK18 | B-Lymphocyte | AK18 | Female | Korean | Not reported |
| AK16 | B-Lymphocyte | AK16 | Female | Korean | Not reported |
| NA18570 | B-Lymphocyte | NA18570 | Female | CHB | Not reported |
| NA18997 | B-Lymphocyte | NA18997 | Female | JPT | Not reported |
| AK8 | B-Lymphocyte | AK8 | Female | Korean | Not reported |
| AK4 | B-Lymphocyte | AK4 | Female | Korean | Not reported |
| NA18537 | B-Lymphocyte | NA18537 | Female | CHB | Not reported |
| NA18969 | B-Lymphocyte | NA18969 | Female | JPT | Not reported |
| NA18582 | B-Lymphocyte | NA18582 | Female | CHB | Not reported |
| AK14 | B-Lymphocyte | AK14 | Female | Korean | Not reported |
| NA18949 | B-Lymphocyte | NA18949 | Female | JPT | Not reported |
| NA18547 | B-Lymphocyte | NA18547 | Female | CHB | Not reported |
| AK20 | B-Lymphocyte | AK20 | Female | Korean | Not reported |
| NA18972 | B-Lymphocyte | NA18972 | Female | JPT | Not reported |
| AK6 | B-Lymphocyte | AK6 | Female | Korean | Not reported |
| NA18947 | B-Lymphocyte | NA18947 | Female | JPT | Not reported |
| NA18942 | B-Lymphocyte | NA18942 | Female | JPT | Not reported |
| NA18526 | B-Lymphocyte | NA18526 | Female | CHB | Not reported |
| AK10 | B-Lymphocyte | AK10 | Female | Korean | Not reported |
| AK12 | B-Lymphocyte | AK12 | Female | Korean | Not reported |
| NA18564 | B-Lymphocyte | NA18564 | Female | CHB | Not reported |
| NA18951 | B-Lymphocyte | NA18951 | Female | JPT | Not reported |
| AK2 | B-Lymphocyte | AK2 | Female | Korean | Not reported |
| NA18552 | B-Lymphocyte | NA18552 | Female | CHB | Not reported |
| NA18999 | B-Lymphocyte | NA18999 | Female | JPT | Not reported |
| NA18973 | B-Lymphocyte | NA18973 | Female | JPT | Not reported |
| NA18542 | B-Lymphocyte | NA18542 | Female | CHB | Not reported |
| NA18592 | B-Lymphocyte | NA18592 | Female | CHB | Not reported |
| NA18968 | B-Lymphocyte | NA18968 | Female | JPT | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | Oligo aCGH | Probe signal intensity | Agilent 24M aCGH | 20,099 |