esv5434
- Organism: Homo sapiens
- Study:estd3 (Wang et al. 2008)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:282
- Publication(s):Wang et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 276 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 276 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 159 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv5434 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 87,563,956 | 87,564,237 |
| esv5434 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 87,597,562 | 87,597,843 |
| esv5434 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000016.8 | Chr16 | 86,155,063 | 86,155,344 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv27875 | copy number loss | YH | Sequencing | Read depth and paired-end mapping | 2,682 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv27875 | Remapped | Perfect | NC_000016.10:g.(87 563956_?)_(?_87564 237)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 87,563,956 | 87,564,237 |
| essv27875 | Remapped | Perfect | NC_000016.9:g.(875 97562_?)_(?_875978 43)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 87,597,562 | 87,597,843 |
| essv27875 | Submitted genomic | NC_000016.8:g.(861 55063_?)_(?_861553 44)del | NCBI36 (hg18) | NC_000016.8 | Chr16 | 86,155,063 | 86,155,344 |