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dbVar

Database of genomic structural variation

esv1001848

Organism: Homo sapiens

Study:estd180 (Pang et al. 2010)
Variant Type:insertion
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:24,001

Publication(s):Pang et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 205 SVs from 48 studies. See in: genome view

Remapped(Score: Perfect):198,501,981-198,514,527

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
esv1001848	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	198,501,981	198,514,527
esv1001848	Remapped	Pass	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NW_003315907.2	Chr1\|NW_00 3315907.2	131,899	155,899
esv1001848	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	198,471,111	198,483,657
esv1001848	Remapped	Pass	GRCh37.p13	PATCHES	Second Pass	NW_003315907.1	Chr1\|NW_00 3315907.1	131,899	155,899
esv1001848	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000001.9	Chr1	196,737,734	196,750,280

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv3564495	insertion	HuRef	Sequencing	Paired-end mapping	23,887

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
essv3564495	Remapped	Pass	NW_003315907.2:g.( 131899_?)_(?_15589 9)ins12232	GRCh38.p12	Second Pass	NW_003315907.2	Chr1\|NW_00 3315907.2	131,899	155,899
essv3564495	Remapped	Perfect	NC_000001.11:g.(19 8501981_?)_(?_1985 14527)ins12232	GRCh38.p12	First Pass	NC_000001.11	Chr1	198,501,981	198,514,527
essv3564495	Remapped	Pass	NW_003315907.1:g.( 131899_?)_(?_15589 9)ins12232	GRCh37.p13	Second Pass	NW_003315907.1	Chr1\|NW_00 3315907.1	131,899	155,899
essv3564495	Remapped	Perfect	NC_000001.10:g.(19 8471111_?)_(?_1984 83657)ins12232	GRCh37.p13	First Pass	NC_000001.10	Chr1	198,471,111	198,483,657
essv3564495	Submitted genomic		NC_000001.9:g.(196 737734_?)_(?_19675 0280)ins12232	NCBI36 (hg18)		NC_000001.9	Chr1	196,737,734	196,750,280

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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