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dbVar

Database of genomic structural variation

esv1003057

Organism: Homo sapiens

Study:estd180 (Pang et al. 2010)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:33,070

Publication(s):Pang et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 386 SVs from 61 studies. See in: genome view

Remapped(Score: Perfect):37,162,256-37,195,325

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
esv1003057	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	37,162,256	37,195,325
esv1003057	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	37,451,184	37,484,253
esv1003057	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000010.9	Chr10	37,491,190	37,524,259

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv3586379	copy number loss	HuRef	Oligo aCGH	Probe signal intensity	23,887

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv3586379	Remapped	Perfect	NC_000010.11:g.(?_ 37162256)_(3719532 5_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	37,162,256	37,195,325
essv3586379	Remapped	Perfect	NC_000010.10:g.(?_ 37451184)_(3748425 3_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	37,451,184	37,484,253
essv3586379	Submitted genomic		NC_000010.9:g.(?_3 7491190)_(37524259 _?)del	NCBI36 (hg18)		NC_000010.9	Chr10	37,491,190	37,524,259

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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