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dbVar

Database of genomic structural variation

esv1004203

Organism: Homo sapiens

Study:estd180 (Pang et al. 2010)
Variant Type:insertion
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:19,789

Publication(s):Pang et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 266 SVs from 42 studies. See in: genome view

Remapped(Score: Perfect):84,341,948-84,351,573

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
esv1004203	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000013.11	Chr13	84,341,948	84,351,573
esv1004203	Remapped	Pass	GRCh38.p12	PATCHES	Second Pass	NW_013171810.1	Chr13\|NW_0 13171810.1	47,508	67,296
esv1004203	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000013.10	Chr13	84,916,083	84,925,708
esv1004203	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000013.9	Chr13	83,814,084	83,823,709

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv3565329	insertion	HuRef	Sequencing	Paired-end mapping	23,887

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
essv3565329	Remapped	Pass	NW_013171810.1:g.( 47508_?)_(?_67296) ins12243	GRCh38.p12	Second Pass	NW_013171810.1	Chr13\|NW_0 13171810.1	47,508	67,296
essv3565329	Remapped	Perfect	NC_000013.11:g.(84 341948_?)_(?_84351 573)ins12243	GRCh38.p12	First Pass	NC_000013.11	Chr13	84,341,948	84,351,573
essv3565329	Remapped	Perfect	NC_000013.10:g.(84 916083_?)_(?_84925 708)ins12243	GRCh37.p13	First Pass	NC_000013.10	Chr13	84,916,083	84,925,708
essv3565329	Submitted genomic		NC_000013.9:g.(838 14084_?)_(?_838237 09)ins12243	NCBI36 (hg18)		NC_000013.9	Chr13	83,814,084	83,823,709

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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