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dbVar

Database of genomic structural variation

esv1010587

Organism: Homo sapiens

Study:estd180 (Pang et al. 2010)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:78,032

Publication(s):Pang et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 504 SVs from 61 studies. See in: genome view

Remapped(Score: Perfect):22,493,401-22,571,432

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
esv1010587	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	22,493,401	22,571,432
esv1010587	Remapped	Good	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NT_187604.1	Chr15\|NT_1 87604.1	140,295	215,648
esv1010587	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000015.9	Chr15	23,301,664	23,379,695
esv1010587	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000015.8	Chr15	20,853,105	20,931,136

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv3586463	copy number loss	HuRef	Oligo aCGH	Probe signal intensity	23,887

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv3586463	Remapped	Good	NT_187604.1:g.(?_1 40295)_(215648_?)d el	GRCh38.p12	Second Pass	NT_187604.1	Chr15\|NT_1 87604.1	140,295	215,648
essv3586463	Remapped	Perfect	NC_000015.10:g.(?_ 22493401)_(2257143 2_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	22,493,401	22,571,432
essv3586463	Remapped	Perfect	NC_000015.9:g.(?_2 3301664)_(23379695 _?)del	GRCh37.p13	First Pass	NC_000015.9	Chr15	23,301,664	23,379,695
essv3586463	Submitted genomic		NC_000015.8:g.(?_2 0853105)_(20931136 _?)del	NCBI36 (hg18)		NC_000015.8	Chr15	20,853,105	20,931,136

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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