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dbVar

Database of genomic structural variation

esv1666878

Organism: Homo sapiens

Study:estd22 (Levy et al. 2007)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:6,065

Publication(s):Levy et al. 2007

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 214 SVs from 60 studies. See in: genome view

Remapped(Score: Perfect):79,966,908-79,972,953

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
esv1666878	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	79,966,908	79,972,953
esv1666878	Remapped	Good	GRCh38.p12	PATCHES	Second Pass	NW_009646199.1	Chr5\|NW_00 9646199.1	109,280	115,344
esv1666878	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	80,888,062	80,894,107
esv1666878	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000004.10	Chr4	81,107,086	81,113,131

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
essv3856568	deletion	HuRef	Sequencing	Sequence alignment	Homozygous	780,358

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
essv3856568	Remapped	Perfect	NC_000004.12:g.799 66908_79972953del	GRCh38.p12	First Pass	NC_000004.12	Chr4	79,966,908	79,972,953
essv3856568	Remapped	Good	NW_009646199.1:g.1 09280_115344del	GRCh38.p12	Second Pass	NW_009646199.1	Chr5\|NW_00 9646199.1	109,280	115,344
essv3856568	Remapped	Perfect	NC_000004.11:g.808 88062_80894107del	GRCh37.p13	First Pass	NC_000004.11	Chr4	80,888,062	80,894,107
essv3856568	Submitted genomic		NC_000004.10:g.811 07086_81113131del	NCBI36 (hg18)		NC_000004.10	Chr4	81,107,086	81,113,131

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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