esv18824
- Organism: Homo sapiens
- Study:estd20 (Conrad et al. 2009)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:22
- Validation:Not tested
- Clinical Assertions: No
- Region Size:21,613
- Publication(s):Conrad et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 654 SVs from 56 studies. See in: genome view
Overlapping variant regions from other studies: 654 SVs from 56 studies. See in: genome view
Overlapping variant regions from other studies: 377 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv18824 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 18,552,208 | 18,573,820 |
| esv18824 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 18,841,137 | 18,862,749 |
| esv18824 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 18,881,143 | 18,902,755 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv83113 | copy number loss | NA19190 | Oligo aCGH | Probe signal intensity | 1,600 |
| essv39794 | copy number loss | NA12287 | Oligo aCGH | Probe signal intensity | 1,073 |
| essv56321 | copy number loss | NA12776 | Oligo aCGH | Probe signal intensity | 1,114 |
| essv51799 | copy number loss | NA12006 | Oligo aCGH | Probe signal intensity | 1,080 |
| essv51649 | copy number loss | NA11931 | Oligo aCGH | Probe signal intensity | 1,027 |
| essv80327 | copy number loss | NA11995 | Oligo aCGH | Probe signal intensity | 1,228 |
| essv74658 | copy number loss | NA12004 | Oligo aCGH | Probe signal intensity | 1,123 |
| essv36131 | copy number loss | NA18907 | Oligo aCGH | Probe signal intensity | 1,412 |
| essv65358 | copy number loss | NA19240 | Oligo aCGH | Probe signal intensity | 1,563 |
| essv79377 | copy number loss | NA12749 | Oligo aCGH | Probe signal intensity | 1,232 |
| essv71465 | copy number loss | NA18916 | Oligo aCGH | Probe signal intensity | 1,538 |
| essv71865 | copy number loss | NA19225 | Oligo aCGH | Probe signal intensity | 1,558 |
| essv37028 | copy number loss | NA11894 | Oligo aCGH | Probe signal intensity | 1,114 |
| essv48214 | copy number loss | NA07037 | Oligo aCGH | Probe signal intensity | 1,154 |
| essv32609 | copy number loss | NA19147 | Oligo aCGH | Probe signal intensity | 1,541 |
| essv74161 | copy number loss | NA12156 | Oligo aCGH | Probe signal intensity | 1,085 |
| essv40662 | copy number loss | NA12878 | Oligo aCGH | Probe signal intensity | 1,172 |
| essv42199 | copy number loss | NA18505 | Oligo aCGH | Probe signal intensity | 1,411 |
| essv45162 | copy number loss | NA19129 | Oligo aCGH | Probe signal intensity | 1,564 |
| essv77698 | copy number loss | NA06985 | Oligo aCGH | Probe signal intensity | 1,144 |
| essv66499 | copy number loss | NA12828 | Oligo aCGH | Probe signal intensity | 1,072 |
| essv75562 | copy number loss | NA12414 | Oligo aCGH | Probe signal intensity | 1,122 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv83113 | Remapped | Perfect | NC_000010.11:g.(?_ 18551436)_(1857363 0_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,551,436 | 18,573,630 |
| essv39794 | Remapped | Perfect | NC_000010.11:g.(?_ 18551691)_(1857321 0_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,551,691 | 18,573,210 |
| essv56321 | Remapped | Perfect | NC_000010.11:g.(?_ 18552208)_(1857341 0_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,552,208 | 18,573,410 |
| essv51799 | Remapped | Perfect | NC_000010.11:g.(?_ 18552367)_(1857382 0_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,552,367 | 18,573,820 |
| essv51649 | Remapped | Perfect | NC_000010.11:g.(?_ 18552425)_(1857410 1_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,552,425 | 18,574,101 |
| essv80327 | Remapped | Perfect | NC_000010.11:g.(?_ 18552489)_(1857363 0_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,552,489 | 18,573,630 |
| essv74658 | Remapped | Perfect | NC_000010.11:g.(?_ 18552592)_(1857382 0_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,552,592 | 18,573,820 |
| essv36131 | Remapped | Perfect | NC_000010.11:g.(?_ 18552811)_(1857321 0_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,552,811 | 18,573,210 |
| essv65358 | Remapped | Perfect | NC_000010.11:g.(?_ 18552811)_(1857341 0_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,552,811 | 18,573,410 |
| essv79377 | Remapped | Perfect | NC_000010.11:g.(?_ 18552811)_(1857341 0_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,552,811 | 18,573,410 |
| essv71465 | Remapped | Perfect | NC_000010.11:g.(?_ 18552811)_(1857355 3_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,552,811 | 18,573,553 |
| essv71865 | Remapped | Perfect | NC_000010.11:g.(?_ 18552811)_(1857363 0_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,552,811 | 18,573,630 |
| essv37028 | Remapped | Perfect | NC_000010.11:g.(?_ 18552811)_(1857382 0_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,552,811 | 18,573,820 |
| essv48214 | Remapped | Perfect | NC_000010.11:g.(?_ 18552869)_(1857327 2_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,552,869 | 18,573,272 |
| essv32609 | Remapped | Perfect | NC_000010.11:g.(?_ 18552869)_(1857335 3_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,552,869 | 18,573,353 |
| essv74161 | Remapped | Perfect | NC_000010.11:g.(?_ 18553024)_(1857341 0_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,553,024 | 18,573,410 |
| essv40662 | Remapped | Perfect | NC_000010.11:g.(?_ 18553075)_(1857335 3_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,553,075 | 18,573,353 |
| essv42199 | Remapped | Perfect | NC_000010.11:g.(?_ 18553100)_(1857341 0_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,553,100 | 18,573,410 |
| essv45162 | Remapped | Perfect | NC_000010.11:g.(?_ 18553100)_(1857341 0_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,553,100 | 18,573,410 |
| essv77698 | Remapped | Perfect | NC_000010.11:g.(?_ 18553880)_(1857335 3_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,553,880 | 18,573,353 |
| essv66499 | Remapped | Perfect | NC_000010.11:g.(?_ 18554240)_(1857453 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,554,240 | 18,574,536 |
| essv75562 | Remapped | Perfect | NC_000010.11:g.(?_ 18554700)_(1857281 5_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 18,554,700 | 18,572,815 |
| essv83113 | Remapped | Perfect | NC_000010.10:g.(?_ 18840365)_(1886255 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,840,365 | 18,862,559 |
| essv39794 | Remapped | Perfect | NC_000010.10:g.(?_ 18840620)_(1886213 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,840,620 | 18,862,139 |
| essv56321 | Remapped | Perfect | NC_000010.10:g.(?_ 18841137)_(1886233 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,841,137 | 18,862,339 |
| essv51799 | Remapped | Perfect | NC_000010.10:g.(?_ 18841296)_(1886274 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,841,296 | 18,862,749 |
| essv51649 | Remapped | Perfect | NC_000010.10:g.(?_ 18841354)_(1886303 0_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,841,354 | 18,863,030 |
| essv80327 | Remapped | Perfect | NC_000010.10:g.(?_ 18841418)_(1886255 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,841,418 | 18,862,559 |
| essv74658 | Remapped | Perfect | NC_000010.10:g.(?_ 18841521)_(1886274 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,841,521 | 18,862,749 |
| essv36131 | Remapped | Perfect | NC_000010.10:g.(?_ 18841740)_(1886213 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,841,740 | 18,862,139 |
| essv65358 | Remapped | Perfect | NC_000010.10:g.(?_ 18841740)_(1886233 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,841,740 | 18,862,339 |
| essv79377 | Remapped | Perfect | NC_000010.10:g.(?_ 18841740)_(1886233 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,841,740 | 18,862,339 |
| essv71465 | Remapped | Perfect | NC_000010.10:g.(?_ 18841740)_(1886248 2_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,841,740 | 18,862,482 |
| essv71865 | Remapped | Perfect | NC_000010.10:g.(?_ 18841740)_(1886255 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,841,740 | 18,862,559 |
| essv37028 | Remapped | Perfect | NC_000010.10:g.(?_ 18841740)_(1886274 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,841,740 | 18,862,749 |
| essv48214 | Remapped | Perfect | NC_000010.10:g.(?_ 18841798)_(1886220 1_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,841,798 | 18,862,201 |
| essv32609 | Remapped | Perfect | NC_000010.10:g.(?_ 18841798)_(1886228 2_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,841,798 | 18,862,282 |
| essv74161 | Remapped | Perfect | NC_000010.10:g.(?_ 18841953)_(1886233 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,841,953 | 18,862,339 |
| essv40662 | Remapped | Perfect | NC_000010.10:g.(?_ 18842004)_(1886228 2_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,842,004 | 18,862,282 |
| essv42199 | Remapped | Perfect | NC_000010.10:g.(?_ 18842029)_(1886233 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,842,029 | 18,862,339 |
| essv45162 | Remapped | Perfect | NC_000010.10:g.(?_ 18842029)_(1886233 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,842,029 | 18,862,339 |
| essv77698 | Remapped | Perfect | NC_000010.10:g.(?_ 18842809)_(1886228 2_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,842,809 | 18,862,282 |
| essv66499 | Remapped | Perfect | NC_000010.10:g.(?_ 18843169)_(1886346 5_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,843,169 | 18,863,465 |
| essv75562 | Remapped | Perfect | NC_000010.10:g.(?_ 18843629)_(1886174 4_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 18,843,629 | 18,861,744 |
| essv83113 | Submitted genomic | NC_000010.9:g.(?_1 8880371)_(18902565 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,880,371 | 18,902,565 | ||
| essv39794 | Submitted genomic | NC_000010.9:g.(?_1 8880626)_(18902145 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,880,626 | 18,902,145 | ||
| essv56321 | Submitted genomic | NC_000010.9:g.(?_1 8881143)_(18902345 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,881,143 | 18,902,345 | ||
| essv51799 | Submitted genomic | NC_000010.9:g.(?_1 8881302)_(18902755 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,881,302 | 18,902,755 | ||
| essv51649 | Submitted genomic | NC_000010.9:g.(?_1 8881360)_(18903036 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,881,360 | 18,903,036 | ||
| essv80327 | Submitted genomic | NC_000010.9:g.(?_1 8881424)_(18902565 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,881,424 | 18,902,565 | ||
| essv74658 | Submitted genomic | NC_000010.9:g.(?_1 8881527)_(18902755 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,881,527 | 18,902,755 | ||
| essv36131 | Submitted genomic | NC_000010.9:g.(?_1 8881746)_(18902145 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,881,746 | 18,902,145 | ||
| essv65358 | Submitted genomic | NC_000010.9:g.(?_1 8881746)_(18902345 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,881,746 | 18,902,345 | ||
| essv79377 | Submitted genomic | NC_000010.9:g.(?_1 8881746)_(18902345 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,881,746 | 18,902,345 | ||
| essv71465 | Submitted genomic | NC_000010.9:g.(?_1 8881746)_(18902488 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,881,746 | 18,902,488 | ||
| essv71865 | Submitted genomic | NC_000010.9:g.(?_1 8881746)_(18902565 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,881,746 | 18,902,565 | ||
| essv37028 | Submitted genomic | NC_000010.9:g.(?_1 8881746)_(18902755 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,881,746 | 18,902,755 | ||
| essv48214 | Submitted genomic | NC_000010.9:g.(?_1 8881804)_(18902207 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,881,804 | 18,902,207 | ||
| essv32609 | Submitted genomic | NC_000010.9:g.(?_1 8881804)_(18902288 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,881,804 | 18,902,288 | ||
| essv74161 | Submitted genomic | NC_000010.9:g.(?_1 8881959)_(18902345 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,881,959 | 18,902,345 | ||
| essv40662 | Submitted genomic | NC_000010.9:g.(?_1 8882010)_(18902288 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,882,010 | 18,902,288 | ||
| essv42199 | Submitted genomic | NC_000010.9:g.(?_1 8882035)_(18902345 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,882,035 | 18,902,345 | ||
| essv45162 | Submitted genomic | NC_000010.9:g.(?_1 8882035)_(18902345 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,882,035 | 18,902,345 | ||
| essv77698 | Submitted genomic | NC_000010.9:g.(?_1 8882815)_(18902288 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,882,815 | 18,902,288 | ||
| essv66499 | Submitted genomic | NC_000010.9:g.(?_1 8883175)_(18903471 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,883,175 | 18,903,471 | ||
| essv75562 | Submitted genomic | NC_000010.9:g.(?_1 8883635)_(18901750 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 18,883,635 | 18,901,750 |