Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

esv20837

Organism: Homo sapiens

Study:estd20 (Conrad et al. 2009)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Yes
Clinical Assertions: No
Region Size:171,897

Publication(s):Conrad et al. 2009

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 759 SVs from 87 studies. See in: genome view

Remapped(Score: Perfect):25,102,393-25,274,289

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
esv20837	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	25,102,393	25,274,289
esv20837	Remapped	Pass	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NW_003315936.1	Chr11\|NW_0 03315936.1	1	109,616
esv20837	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000011.9	Chr11	25,123,939	25,295,835
esv20837	Remapped	Pass	GRCh37.p13	PATCHES	Second Pass	NW_003315936.1	Chr11\|NW_0 03315936.1	1	109,616
esv20837	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000011.8	Chr11	25,080,515	25,252,411

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv54671	copy number loss	NA19099	Oligo aCGH	Probe signal intensity	1,498

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv54671	Remapped	Pass	NW_003315936.1:g.( ?_1)_(109616_?)del	GRCh38.p12	Second Pass	NW_003315936.1	Chr11\|NW_0 03315936.1	1	109,616
essv54671	Remapped	Perfect	NC_000011.10:g.(?_ 25102393)_(2527428 9_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	25,102,393	25,274,289
essv54671	Remapped	Pass	NW_003315936.1:g.( ?_1)_(109616_?)del	GRCh37.p13	Second Pass	NW_003315936.1	Chr11\|NW_0 03315936.1	1	109,616
essv54671	Remapped	Perfect	NC_000011.9:g.(?_2 5123939)_(25295835 _?)del	GRCh37.p13	First Pass	NC_000011.9	Chr11	25,123,939	25,295,835
essv54671	Submitted genomic		NC_000011.8:g.(?_2 5080515)_(25252411 _?)del	NCBI36 (hg18)		NC_000011.8	Chr11	25,080,515	25,252,411

Validation Information

Variant Call ID	Experiment ID	Sample ID	Method	Analysis	Result
essv54671	2	NA19099	Oligo aCGH	Probe signal intensity	Pass

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI