Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

esv2422300

Organism: Homo sapiens

Study:estd196 (Simon-Sanchez et al. 2006)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:109,406

Publication(s):Simon-Sanchez et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 868 SVs from 80 studies. See in: genome view

Remapped(Score: Perfect):1,763,378-1,850,253

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
esv2422300	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000018.10	Chr18	1,763,378	1,850,253
esv2422300	Remapped	Pass	GRCh38.p12	PATCHES	Second Pass	NW_019805503.1	Chr18\|NW_0 19805503.1	19,197	128,602
esv2422300	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000018.9	Chr18	1,763,379	1,850,254
esv2422300	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000018.8	Chr18	1,753,379	1,840,254

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv5161503	deletion	ND03938	SNP array	SNP genotyping analysis	5

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv5161503	Remapped	Pass	NW_019805503.1:g.( ?_19197)_(128602_? )del	GRCh38.p12	Second Pass	NW_019805503.1	Chr18\|NW_0 19805503.1	19,197	128,602
essv5161503	Remapped	Perfect	NC_000018.10:g.(?_ 1763378)_(1850253_ ?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	1,763,378	1,850,253
essv5161503	Remapped	Perfect	NC_000018.9:g.(?_1 763379)_(1850254_? )del	GRCh37.p13	First Pass	NC_000018.9	Chr18	1,763,379	1,850,254
essv5161503	Submitted genomic		NC_000018.8:g.(?_1 753379)_(1840254_? )del	NCBI35 (hg17)		NC_000018.8	Chr18	1,753,379	1,840,254

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI