esv2470039
- Organism: Homo sapiens
- Study:estd197 (McKernan et al. 2009)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:36,657
- Description:originalFile=Yoruban_inv.gff
- Publication(s):McKernan et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 847 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 847 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 19 SVs from 9 studies. See in: genome view
Overlapping variant regions from other studies: 392 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| esv2470039 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 55,779,809 | 55,780,424 | 55,816,344 | 55,816,465 |
| esv2470039 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 55,813,721 | 55,814,336 | 55,850,256 | 55,850,377 |
| esv2470039 | Remapped | Pass | GRCh37.p13 | PATCHES | Second Pass | NW_003315945.1 | Chr16|NW_0 03315945.1 | 4,436 | 4,436 | 32,360 | - |
| esv2470039 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000016.8 | Chr16 | 54,371,222 | 54,371,837 | 54,407,757 | 54,407,878 |
Variant Call Information
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv5267914 | Remapped | Perfect | NC_000016.10:g.(55 779809_55780424)_( 55816344_55816465) inv | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 55,779,809 | 55,780,424 | 55,816,344 | 55,816,465 |
| essv5267914 | Remapped | Pass | NW_003315945.1:g.( 4436_4436)_(32360_ ?)inv | GRCh37.p13 | Second Pass | NW_003315945.1 | Chr16|NW_0 03315945.1 | 4,436 | 4,436 | 32,360 | - |
| essv5267914 | Remapped | Perfect | NC_000016.9:g.(558 13721_55814336)_(5 5850256_55850377)i nv | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 55,813,721 | 55,814,336 | 55,850,256 | 55,850,377 |
| essv5267914 | Submitted genomic | NC_000016.8:g.(543 71222_54371837)_(5 4407757_54407878)i nv | NCBI36 (hg18) | NC_000016.8 | Chr16 | 54,371,222 | 54,371,837 | 54,407,757 | 54,407,878 |