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dbVar

Database of genomic structural variation

esv2560892

Organism: Homo sapiens

Study:estd197 (McKernan et al. 2009)
Variant Type:insertion
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1,707

Description:originalFile=Yoruban_large_indels_8.4x.gff
Publication(s):McKernan et al. 2009

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 429 SVs from 50 studies. See in: genome view

Remapped(Score: Perfect):29,131,095-29,131,864

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
esv2560892	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	29,131,095	29,131,864
esv2560892	Remapped	Pass	GRCh38.p12	ALT_REF_LOCI_2	Second Pass	NT_187660.1	Chr15\|NT_1 87660.1	1,405,724	1,407,430
esv2560892	Remapped	Pass	GRCh38.p12	PATCHES	Second Pass	NW_011332701.1	Chr15\|NW_0 11332701.1	1,293,240	1,294,946
esv2560892	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000015.9	Chr15	29,423,298	29,424,067
esv2560892	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000015.8	Chr15	27,210,590	27,211,359

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv5256347	insertion	NA18507	Sequencing	Paired-end mapping	232,775

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
essv5256347	Remapped	Pass	NT_187660.1:g.(140 5724_?)_(?_1407430 )ins?	GRCh38.p12	Second Pass	NT_187660.1	Chr15\|NT_1 87660.1	1,405,724	1,407,430
essv5256347	Remapped	Pass	NW_011332701.1:g.( 1293240_?)_(?_1294 946)ins?	GRCh38.p12	Second Pass	NW_011332701.1	Chr15\|NW_0 11332701.1	1,293,240	1,294,946
essv5256347	Remapped	Perfect	NC_000015.10:g.(29 131095_?)_(?_29131 864)ins?	GRCh38.p12	First Pass	NC_000015.10	Chr15	29,131,095	29,131,864
essv5256347	Remapped	Perfect	NC_000015.9:g.(294 23298_?)_(?_294240 67)ins?	GRCh37.p13	First Pass	NC_000015.9	Chr15	29,423,298	29,424,067
essv5256347	Submitted genomic		NC_000015.8:g.(272 10590_?)_(?_272113 59)ins?	NCBI36 (hg18)		NC_000015.8	Chr15	27,210,590	27,211,359

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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