esv2660911
- Organism: Homo sapiens
- Study:estd199 (1000 Genomes Consortium Phase 1)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:2
- Validation:Yes
- Clinical Assertions: No
- Region Size:11,839
- Description:High quality site
- Publication(s):1000 Genomes Project Consortium et al. 2012
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 137 SVs from 34 studies. See in: genome view
Overlapping variant regions from other studies: 137 SVs from 34 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2660911 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 146,925,926 | 146,937,764 |
| esv2660911 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 146,305,489 | 146,317,327 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv5504464 | deletion | SAMN00001229 | Sequencing | Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping | 868 |
| essv5811254 | deletion | SAMN00801602 | Sequencing | Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping | 1,033 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv5504464 | Remapped | Perfect | NC_000005.10:g.146 925926_146937764de lT | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 146,925,926 | 146,937,764 |
| essv5811254 | Remapped | Perfect | NC_000005.10:g.146 925926_146937764de lT | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 146,925,926 | 146,937,764 |
| essv5504464 | Submitted genomic | NC_000005.9:g.1463 05489_146317327del T | GRCh37 (hg19) | NC_000005.9 | Chr5 | 146,305,489 | 146,317,327 | ||
| essv5811254 | Submitted genomic | NC_000005.9:g.1463 05489_146317327del T | GRCh37 (hg19) | NC_000005.9 | Chr5 | 146,305,489 | 146,317,327 |
Validation Information
| Variant Call ID | Experiment ID | Sample ID | Method | Analysis | Result |
|---|---|---|---|---|---|
| essv5504464 | 7 | SAMN00001229 | SNP array | Probe signal intensity | Pass |
| essv5811254 | 7 | SAMN00801602 | SNP array | Probe signal intensity | Pass |