esv2676448
- Organism: Homo sapiens
- Study:estd199 (1000 Genomes Consortium Phase 1)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Yes
- Clinical Assertions: No
- Region Size:21,337
- Description:High quality site
- Publication(s):1000 Genomes Project Consortium et al. 2012
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 399 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 399 SVs from 62 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| esv2676448 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 177,546,034 | 177,546,071 | 177,567,320 | 177,567,370 |
| esv2676448 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 178,467,188 | 178,467,225 | 178,488,474 | 178,488,524 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv5902807 | deletion | SAMN00001583 | Sequencing | Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping | 1,451 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv5902807 | Remapped | Perfect | NC_000004.12:g.(17 7546034_177546071) _(177567320_177567 370)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 177,546,034 | 177,546,071 | 177,567,320 | 177,567,370 |
| essv5902807 | Submitted genomic | NC_000004.11:g.(17 8467188_178467225) _(178488474_178488 524)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 178,467,188 | 178,467,225 | 178,488,474 | 178,488,524 |
Validation Information
| Variant Call ID | Experiment ID | Sample ID | Method | Analysis | Result |
|---|---|---|---|---|---|
| essv5902807 | 7 | SAMN00001583 | SNP array | Probe signal intensity | Pass |