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dbVar

Database of genomic structural variation

esv2744814

Organism: Homo sapiens

Study:estd201 (Wong et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:72,557

Publication(s):Wong et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 377 SVs from 56 studies. See in: genome view

Remapped(Score: Perfect):79,110,922-79,183,478

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
esv2744814	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	79,110,922	79,183,478
esv2744814	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	78,821,967	78,894,523

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv6882255	deletion	SSM094	Sequencing	Paired-end mapping	2,544
essv6931731	deletion	SSM020	Sequencing	Paired-end mapping	3,809
essv6845883	deletion	SSM085	Sequencing	Paired-end mapping	2,776

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
essv6882255	Remapped	Perfect	NC_000011.10:g.(79 110922_?)_(?_79183 478)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	79,110,922	79,183,478
essv6931731	Remapped	Perfect	NC_000011.10:g.(79 179516_?)_(?_79181 016)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	79,179,516	79,181,016
essv6845883	Remapped	Perfect	NC_000011.10:g.(79 179553_?)_(?_79181 000)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	79,179,553	79,181,000
essv6882255	Submitted genomic		NC_000011.9:g.(788 21967_?)_(?_788945 23)del	GRCh37 (hg19)		NC_000011.9	Chr11	78,821,967	78,894,523
essv6931731	Submitted genomic		NC_000011.9:g.(788 90561_?)_(?_788920 61)del	GRCh37 (hg19)		NC_000011.9	Chr11	78,890,561	78,892,061
essv6845883	Submitted genomic		NC_000011.9:g.(788 90598_?)_(?_788920 45)del	GRCh37 (hg19)		NC_000011.9	Chr11	78,890,598	78,892,045

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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