esv274874
- Organism: Homo sapiens
- Study:estd176 (Banerjee et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:11,496
- Publication(s):Banerjee et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 89 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 89 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 9 SVs from 5 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| esv274874 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 41,202,225 | 41,202,251 | 41,213,598 | 41,213,720 |
| esv274874 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 41,243,716 | 41,243,742 | 41,255,089 | 41,255,211 |
| esv274874 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 41,218,720 | 41,218,746 | 41,230,093 | 41,230,215 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| essv2586156 | copy number loss | SNP array | Other |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv2586156 | Remapped | Perfect | NC_000003.12:g.(41 202225_41202251)_( 41213598_41213720) del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 41,202,225 | 41,202,251 | 41,213,598 | 41,213,720 |
| essv2586156 | Remapped | Perfect | NC_000003.11:g.(41 243716_41243742)_( 41255089_41255211) del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 41,243,716 | 41,243,742 | 41,255,089 | 41,255,211 |
| essv2586156 | Submitted genomic | NC_000003.10:g.(41 218720_41218746)_( 41230093_41230215) del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 41,218,720 | 41,218,746 | 41,230,093 | 41,230,215 |