esv274896
- Organism: Homo sapiens
- Study:estd176 (Banerjee et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:21,101
- Publication(s):Banerjee et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 122 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 122 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 16 SVs from 8 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| esv274896 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 38,201,009 | 38,207,737 | 38,208,445 | 38,222,109 |
| esv274896 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 38,242,500 | 38,249,228 | 38,249,936 | 38,263,600 |
| esv274896 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 38,217,504 | 38,224,232 | 38,224,940 | 38,238,604 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| essv2585471 | copy number loss | SNP array | Other |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv2585471 | Remapped | Perfect | NC_000003.12:g.(38 201009_38207737)_( 38208445_38222109) del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 38,201,009 | 38,207,737 | 38,208,445 | 38,222,109 |
| essv2585471 | Remapped | Perfect | NC_000003.11:g.(38 242500_38249228)_( 38249936_38263600) del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 38,242,500 | 38,249,228 | 38,249,936 | 38,263,600 |
| essv2585471 | Submitted genomic | NC_000003.10:g.(38 217504_38224232)_( 38224940_38238604) del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 38,217,504 | 38,224,232 | 38,224,940 | 38,238,604 |