esv275097
- Organism: Homo sapiens
- Study:estd176 (Banerjee et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:18,155
- Publication(s):Banerjee et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 170 SVs from 34 studies. See in: genome view
Overlapping variant regions from other studies: 170 SVs from 34 studies. See in: genome view
Overlapping variant regions from other studies: 19 SVs from 8 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| esv275097 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 70,922,353 | 70,922,679 | 70,940,469 | 70,940,507 |
| esv275097 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 71,632,056 | 71,632,382 | 71,650,172 | 71,650,210 |
| esv275097 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 71,688,777 | 71,689,103 | 71,706,893 | 71,706,931 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| essv2585433 | copy number loss | SNP array | Other |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv2585433 | Remapped | Perfect | NC_000006.12:g.(70 922353_70922679)_( 70940469_70940507) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 70,922,353 | 70,922,679 | 70,940,469 | 70,940,507 |
| essv2585433 | Remapped | Perfect | NC_000006.11:g.(71 632056_71632382)_( 71650172_71650210) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 71,632,056 | 71,632,382 | 71,650,172 | 71,650,210 |
| essv2585433 | Submitted genomic | NC_000006.10:g.(71 688777_71689103)_( 71706893_71706931) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 71,688,777 | 71,689,103 | 71,706,893 | 71,706,931 |