esv2752275
- Organism: Homo sapiens
- Study:estd55 (Pinto et al. 2007)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:359,121
- Description:Sample level SV from stringent call set
- Publication(s):Pinto et al. 2007
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1499 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 1503 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 52 SVs from 9 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2752275 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 11,224,627 | 11,583,747 |
| esv2752275 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 11,224,627 | 11,583,747 |
| esv2752275 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000009.9 | Chr9 | 11,214,627 | 11,573,747 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv6981531 | copy number loss | BEC_293 | SNP array | SNP genotyping analysis | 23 |
| essv6987978 | copy number loss | BEC_293 | SNP array | SNP genotyping analysis | 23 |
| essv6981532 | copy number loss | BEC_293 | SNP array | SNP genotyping analysis | 23 |
| essv6989247 | copy number loss | BEC_293 | SNP array | SNP genotyping analysis | 23 |
| essv6981533 | copy number loss | BEC_293 | SNP array | SNP genotyping analysis | 23 |
| essv6987979 | copy number loss | BEC_293 | SNP array | SNP genotyping analysis | 23 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv6981531 | Remapped | Perfect | NC_000009.12:g.(?_ 11224627)_(1156205 1_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,224,627 | 11,562,051 |
| essv6987978 | Remapped | Perfect | NC_000009.12:g.(?_ 11224627)_(1158374 7_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,224,627 | 11,583,747 |
| essv6981532 | Remapped | Perfect | NC_000009.12:g.(?_ 11236474)_(1153814 2_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,236,474 | 11,538,142 |
| essv6989247 | Remapped | Perfect | NC_000009.12:g.(?_ 11262300)_(1133600 0_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,262,300 | 11,336,000 |
| essv6981533 | Remapped | Perfect | NC_000009.12:g.(?_ 11265200)_(1153810 0_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,265,200 | 11,538,100 |
| essv6987979 | Remapped | Perfect | NC_000009.12:g.(?_ 11416000)_(1157580 0_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,416,000 | 11,575,800 |
| essv6981531 | Remapped | Perfect | NC_000009.11:g.(?_ 11224627)_(1156205 1_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,224,627 | 11,562,051 |
| essv6987978 | Remapped | Perfect | NC_000009.11:g.(?_ 11224627)_(1158374 7_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,224,627 | 11,583,747 |
| essv6981532 | Remapped | Perfect | NC_000009.11:g.(?_ 11236474)_(1153814 2_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,236,474 | 11,538,142 |
| essv6989247 | Remapped | Perfect | NC_000009.11:g.(?_ 11262300)_(1133600 0_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,262,300 | 11,336,000 |
| essv6981533 | Remapped | Perfect | NC_000009.11:g.(?_ 11265200)_(1153810 0_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,265,200 | 11,538,100 |
| essv6987979 | Remapped | Perfect | NC_000009.11:g.(?_ 11416000)_(1157580 0_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,416,000 | 11,575,800 |
| essv6981531 | Submitted genomic | NC_000009.9:g.(?_1 1214627)_(11552051 _?)del | NCBI35 (hg17) | NC_000009.9 | Chr9 | 11,214,627 | 11,552,051 | ||
| essv6987978 | Submitted genomic | NC_000009.9:g.(?_1 1214627)_(11573747 _?)del | NCBI35 (hg17) | NC_000009.9 | Chr9 | 11,214,627 | 11,573,747 | ||
| essv6981532 | Submitted genomic | NC_000009.9:g.(?_1 1226474)_(11528142 _?)del | NCBI35 (hg17) | NC_000009.9 | Chr9 | 11,226,474 | 11,528,142 | ||
| essv6989247 | Submitted genomic | NC_000009.9:g.(?_1 1252300)_(11326000 _?)del | NCBI35 (hg17) | NC_000009.9 | Chr9 | 11,252,300 | 11,326,000 | ||
| essv6981533 | Submitted genomic | NC_000009.9:g.(?_1 1255200)_(11528100 _?)del | NCBI35 (hg17) | NC_000009.9 | Chr9 | 11,255,200 | 11,528,100 | ||
| essv6987979 | Submitted genomic | NC_000009.9:g.(?_1 1406000)_(11565800 _?)del | NCBI35 (hg17) | NC_000009.9 | Chr9 | 11,406,000 | 11,565,800 |