esv2754062
- Organism: Homo sapiens
- Study:estd55 (Pinto et al. 2007)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:399,472
- Publication(s):Pinto et al. 2007
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1275 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 1276 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 44 SVs from 6 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2754062 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 4,261,603 | 4,661,074 |
| esv2754062 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000023.10 | ChrX | 4,179,644 | 4,579,115 |
| esv2754062 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000023.8 | ChrX | 4,039,380 | 4,438,851 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv6987498 | copy number gain | BEC_779 | SNP array | SNP genotyping analysis | 14 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv6987498 | Remapped | Perfect | NC_000023.11:g.(?_ 4261603)_(4661074_ ?)dup | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 4,261,603 | 4,661,074 |
| essv6987498 | Remapped | Perfect | NC_000023.10:g.(?_ 4179644)_(4579115_ ?)dup | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 4,179,644 | 4,579,115 |
| essv6987498 | Submitted genomic | NC_000023.8:g.(?_4 039380)_(4438851_? )dup | NCBI35 (hg17) | NC_000023.8 | ChrX | 4,039,380 | 4,438,851 |