esv275463
- Organism: Homo sapiens
- Study:estd176 (Banerjee et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:11,520
- Publication(s):Banerjee et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 132 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 132 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 21 SVs from 11 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| esv275463 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 42,184,845 | 42,191,851 | 42,192,534 | 42,196,364 |
| esv275463 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000019.9 | Chr19 | 42,688,997 | 42,696,003 | 42,696,686 | 42,700,516 |
| esv275463 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000019.8 | Chr19 | 47,380,837 | 47,387,843 | 47,388,526 | 47,392,356 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| essv2585632 | copy number loss | SNP array | Other |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv2585632 | Remapped | Perfect | NC_000019.10:g.(42 184845_42191851)_( 42192534_42196364) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 42,184,845 | 42,191,851 | 42,192,534 | 42,196,364 |
| essv2585632 | Remapped | Perfect | NC_000019.9:g.(426 88997_42696003)_(4 2696686_42700516)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 42,688,997 | 42,696,003 | 42,696,686 | 42,700,516 |
| essv2585632 | Submitted genomic | NC_000019.8:g.(473 80837_47387843)_(4 7388526_47392356)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 47,380,837 | 47,387,843 | 47,388,526 | 47,392,356 |