esv2756534
- Organism: Homo sapiens
- Study:estd55 (Pinto et al. 2007)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:345,560
- Publication(s):Pinto et al. 2007
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 976 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 976 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 61 SVs from 5 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2756534 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 106,091,372 | 106,436,931 |
| esv2756534 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 105,427,073 | 105,772,632 |
| esv2756534 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000005.8 | Chr5 | 105,454,972 | 105,800,531 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv6984508 | copy number loss | BEC_713 | SNP array | SNP genotyping analysis | 30 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv6984508 | Remapped | Perfect | NC_000005.10:g.(?_ 106091372)_(106436 931_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 106,091,372 | 106,436,931 |
| essv6984508 | Remapped | Perfect | NC_000005.9:g.(?_1 05427073)_(1057726 32_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 105,427,073 | 105,772,632 |
| essv6984508 | Submitted genomic | NC_000005.8:g.(?_1 05454972)_(1058005 31_?)del | NCBI35 (hg17) | NC_000005.8 | Chr5 | 105,454,972 | 105,800,531 |