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dbVar

Database of genomic structural variation

esv2760144

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:207,451

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 775 SVs from 64 studies. See in: genome view

Remapped(Score: Perfect):101,373,136-101,580,586

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2760144	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	101,373,136	101,580,586
esv2760144	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	103,132,893	103,340,343
esv2760144	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000010.9	Chr10	103,122,883	103,330,333

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv6995207	copy number gain	SW_1481	SNP array	SNP genotyping analysis	19
essv6995208	copy number gain	SW_1012	SNP array	SNP genotyping analysis	39
essv6995209	copy number gain	SW_1053	SNP array	SNP genotyping analysis	26

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv6995207	Remapped	Perfect	NC_000010.11:g.(?_ 101373136)_(101580 586_?)dup	GRCh38.p12	First Pass	NC_000010.11	Chr10	101,373,136	101,580,586
essv6995208	Remapped	Perfect	NC_000010.11:g.(?_ 101528508)_(101563 809_?)dup	GRCh38.p12	First Pass	NC_000010.11	Chr10	101,528,508	101,563,809
essv6995209	Remapped	Perfect	NC_000010.11:g.(?_ 101528508)_(101563 809_?)dup	GRCh38.p12	First Pass	NC_000010.11	Chr10	101,528,508	101,563,809
essv6995207	Remapped	Perfect	NC_000010.10:g.(?_ 103132893)_(103340 343_?)dup	GRCh37.p13	First Pass	NC_000010.10	Chr10	103,132,893	103,340,343
essv6995208	Remapped	Perfect	NC_000010.10:g.(?_ 103288265)_(103323 566_?)dup	GRCh37.p13	First Pass	NC_000010.10	Chr10	103,288,265	103,323,566
essv6995209	Remapped	Perfect	NC_000010.10:g.(?_ 103288265)_(103323 566_?)dup	GRCh37.p13	First Pass	NC_000010.10	Chr10	103,288,265	103,323,566
essv6995207	Submitted genomic		NC_000010.9:g.(?_1 03122883)_(1033303 33_?)dup	NCBI36 (hg18)		NC_000010.9	Chr10	103,122,883	103,330,333
essv6995208	Submitted genomic		NC_000010.9:g.(?_1 03278255)_(1033135 56_?)dup	NCBI36 (hg18)		NC_000010.9	Chr10	103,278,255	103,313,556
essv6995209	Submitted genomic		NC_000010.9:g.(?_1 03278255)_(1033135 56_?)dup	NCBI36 (hg18)		NC_000010.9	Chr10	103,278,255	103,313,556

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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