esv2760162
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:9
- Validation:Not tested
- Clinical Assertions: No
- Region Size:6,953
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 273 SVs from 56 studies. See in: genome view
Overlapping variant regions from other studies: 273 SVs from 56 studies. See in: genome view
Overlapping variant regions from other studies: 155 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2760162 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 6,615,813 | 6,622,765 |
| esv2760162 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 6,657,775 | 6,664,727 |
| esv2760162 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 6,697,781 | 6,704,733 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7018148 | copy number loss | RW_0090 | SNP array | SNP genotyping analysis | 50 |
| essv7018149 | copy number loss | RW_0181 | SNP array | SNP genotyping analysis | 65 |
| essv7018150 | copy number loss | RW_0186 | SNP array | SNP genotyping analysis | 74 |
| essv7018151 | copy number loss | RW_0233 | SNP array | SNP genotyping analysis | 37 |
| essv7018152 | copy number loss | RW_0610 | SNP array | SNP genotyping analysis | 32 |
| essv7018153 | copy number loss | RW_0201 | SNP array | SNP genotyping analysis | 57 |
| essv7018154 | copy number loss | RW_0214 | SNP array | SNP genotyping analysis | 24 |
| essv7018156 | copy number loss | RW_0554 | SNP array | SNP genotyping analysis | 41 |
| essv7018157 | copy number loss | RW_0531 | SNP array | SNP genotyping analysis | 28 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7018148 | Remapped | Perfect | NC_000010.11:g.(?_ 6615813)_(6622192_ ?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 6,615,813 | 6,622,192 |
| essv7018149 | Remapped | Perfect | NC_000010.11:g.(?_ 6615813)_(6622192_ ?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 6,615,813 | 6,622,192 |
| essv7018150 | Remapped | Perfect | NC_000010.11:g.(?_ 6615813)_(6622192_ ?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 6,615,813 | 6,622,192 |
| essv7018151 | Remapped | Perfect | NC_000010.11:g.(?_ 6615813)_(6622192_ ?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 6,615,813 | 6,622,192 |
| essv7018152 | Remapped | Perfect | NC_000010.11:g.(?_ 6615813)_(6622192_ ?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 6,615,813 | 6,622,192 |
| essv7018153 | Remapped | Perfect | NC_000010.11:g.(?_ 6615813)_(6622545_ ?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 6,615,813 | 6,622,545 |
| essv7018154 | Remapped | Perfect | NC_000010.11:g.(?_ 6615813)_(6622545_ ?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 6,615,813 | 6,622,545 |
| essv7018156 | Remapped | Perfect | NC_000010.11:g.(?_ 6615813)_(6622545_ ?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 6,615,813 | 6,622,545 |
| essv7018157 | Remapped | Perfect | NC_000010.11:g.(?_ 6615813)_(6622765_ ?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 6,615,813 | 6,622,765 |
| essv7018148 | Remapped | Perfect | NC_000010.10:g.(?_ 6657775)_(6664154_ ?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 6,657,775 | 6,664,154 |
| essv7018149 | Remapped | Perfect | NC_000010.10:g.(?_ 6657775)_(6664154_ ?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 6,657,775 | 6,664,154 |
| essv7018150 | Remapped | Perfect | NC_000010.10:g.(?_ 6657775)_(6664154_ ?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 6,657,775 | 6,664,154 |
| essv7018151 | Remapped | Perfect | NC_000010.10:g.(?_ 6657775)_(6664154_ ?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 6,657,775 | 6,664,154 |
| essv7018152 | Remapped | Perfect | NC_000010.10:g.(?_ 6657775)_(6664154_ ?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 6,657,775 | 6,664,154 |
| essv7018153 | Remapped | Perfect | NC_000010.10:g.(?_ 6657775)_(6664507_ ?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 6,657,775 | 6,664,507 |
| essv7018154 | Remapped | Perfect | NC_000010.10:g.(?_ 6657775)_(6664507_ ?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 6,657,775 | 6,664,507 |
| essv7018156 | Remapped | Perfect | NC_000010.10:g.(?_ 6657775)_(6664507_ ?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 6,657,775 | 6,664,507 |
| essv7018157 | Remapped | Perfect | NC_000010.10:g.(?_ 6657775)_(6664727_ ?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 6,657,775 | 6,664,727 |
| essv7018148 | Submitted genomic | NC_000010.9:g.(?_6 697781)_(6704160_? )del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 6,697,781 | 6,704,160 | ||
| essv7018149 | Submitted genomic | NC_000010.9:g.(?_6 697781)_(6704160_? )del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 6,697,781 | 6,704,160 | ||
| essv7018150 | Submitted genomic | NC_000010.9:g.(?_6 697781)_(6704160_? )del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 6,697,781 | 6,704,160 | ||
| essv7018151 | Submitted genomic | NC_000010.9:g.(?_6 697781)_(6704160_? )del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 6,697,781 | 6,704,160 | ||
| essv7018152 | Submitted genomic | NC_000010.9:g.(?_6 697781)_(6704160_? )del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 6,697,781 | 6,704,160 | ||
| essv7018153 | Submitted genomic | NC_000010.9:g.(?_6 697781)_(6704513_? )del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 6,697,781 | 6,704,513 | ||
| essv7018154 | Submitted genomic | NC_000010.9:g.(?_6 697781)_(6704513_? )del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 6,697,781 | 6,704,513 | ||
| essv7018156 | Submitted genomic | NC_000010.9:g.(?_6 697781)_(6704513_? )del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 6,697,781 | 6,704,513 | ||
| essv7018157 | Submitted genomic | NC_000010.9:g.(?_6 697781)_(6704733_? )del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 6,697,781 | 6,704,733 |