esv2760189
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:21
- Validation:Not tested
- Clinical Assertions: No
- Region Size:15,489
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 463 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 463 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 184 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2760189 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 54,693,189 | 54,708,677 |
| esv2760189 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 56,452,949 | 56,468,437 |
| esv2760189 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 56,122,955 | 56,138,443 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv6994875 | copy number gain | SW_0046 | SNP array | SNP genotyping analysis | 54 |
| essv6994876 | copy number gain | SW_0063 | SNP array | SNP genotyping analysis | 48 |
| essv6994877 | copy number gain | SW_0086 | SNP array | SNP genotyping analysis | 50 |
| essv6994879 | copy number gain | SW_0118 | SNP array | SNP genotyping analysis | 46 |
| essv6994880 | copy number gain | SW_0760 | SNP array | SNP genotyping analysis | 44 |
| essv6994881 | copy number gain | SW_0775 | SNP array | SNP genotyping analysis | 68 |
| essv6994882 | copy number gain | SW_0790 | SNP array | SNP genotyping analysis | 48 |
| essv6994883 | copy number gain | SW_0805 | SNP array | SNP genotyping analysis | 42 |
| essv6994884 | copy number gain | SW_1111 | SNP array | SNP genotyping analysis | 52 |
| essv6994885 | copy number gain | SW_1156 | SNP array | SNP genotyping analysis | 48 |
| essv6994886 | copy number gain | SW_1198 | SNP array | SNP genotyping analysis | 39 |
| essv6994887 | copy number gain | SW_0169 | SNP array | SNP genotyping analysis | 40 |
| essv6994888 | copy number gain | SW_0176 | SNP array | SNP genotyping analysis | 26 |
| essv6994890 | copy number gain | SW_0607 | SNP array | SNP genotyping analysis | 34 |
| essv6994891 | copy number gain | SW_0815 | SNP array | SNP genotyping analysis | 46 |
| essv6994892 | copy number gain | SW_1147 | SNP array | SNP genotyping analysis | 41 |
| essv6994893 | copy number gain | SW_1273 | SNP array | SNP genotyping analysis | 58 |
| essv6994894 | copy number gain | SW_0175 | SNP array | SNP genotyping analysis | 30 |
| essv6994895 | copy number gain | SW_0351 | SNP array | SNP genotyping analysis | 27 |
| essv6994896 | copy number gain | SW_0354 | SNP array | SNP genotyping analysis | 16 |
| essv6994897 | copy number gain | SW_0570 | SNP array | SNP genotyping analysis | 39 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv6994875 | Remapped | Perfect | NC_000010.11:g.(?_ 54693189)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,693,189 | 54,708,677 |
| essv6994876 | Remapped | Perfect | NC_000010.11:g.(?_ 54693189)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,693,189 | 54,708,677 |
| essv6994877 | Remapped | Perfect | NC_000010.11:g.(?_ 54693189)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,693,189 | 54,708,677 |
| essv6994879 | Remapped | Perfect | NC_000010.11:g.(?_ 54693189)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,693,189 | 54,708,677 |
| essv6994880 | Remapped | Perfect | NC_000010.11:g.(?_ 54693189)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,693,189 | 54,708,677 |
| essv6994881 | Remapped | Perfect | NC_000010.11:g.(?_ 54693189)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,693,189 | 54,708,677 |
| essv6994882 | Remapped | Perfect | NC_000010.11:g.(?_ 54693189)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,693,189 | 54,708,677 |
| essv6994883 | Remapped | Perfect | NC_000010.11:g.(?_ 54693189)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,693,189 | 54,708,677 |
| essv6994884 | Remapped | Perfect | NC_000010.11:g.(?_ 54693189)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,693,189 | 54,708,677 |
| essv6994885 | Remapped | Perfect | NC_000010.11:g.(?_ 54693189)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,693,189 | 54,708,677 |
| essv6994886 | Remapped | Perfect | NC_000010.11:g.(?_ 54693189)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,693,189 | 54,708,677 |
| essv6994887 | Remapped | Perfect | NC_000010.11:g.(?_ 54697027)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,697,027 | 54,708,677 |
| essv6994888 | Remapped | Perfect | NC_000010.11:g.(?_ 54697027)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,697,027 | 54,708,677 |
| essv6994890 | Remapped | Perfect | NC_000010.11:g.(?_ 54697027)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,697,027 | 54,708,677 |
| essv6994891 | Remapped | Perfect | NC_000010.11:g.(?_ 54697027)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,697,027 | 54,708,677 |
| essv6994892 | Remapped | Perfect | NC_000010.11:g.(?_ 54697027)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,697,027 | 54,708,677 |
| essv6994893 | Remapped | Perfect | NC_000010.11:g.(?_ 54697027)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,697,027 | 54,708,677 |
| essv6994894 | Remapped | Perfect | NC_000010.11:g.(?_ 54701565)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,701,565 | 54,708,677 |
| essv6994895 | Remapped | Perfect | NC_000010.11:g.(?_ 54701565)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,701,565 | 54,708,677 |
| essv6994896 | Remapped | Perfect | NC_000010.11:g.(?_ 54701565)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,701,565 | 54,708,677 |
| essv6994897 | Remapped | Perfect | NC_000010.11:g.(?_ 54701565)_(5470867 7_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,701,565 | 54,708,677 |
| essv6994875 | Remapped | Perfect | NC_000010.10:g.(?_ 56452949)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,452,949 | 56,468,437 |
| essv6994876 | Remapped | Perfect | NC_000010.10:g.(?_ 56452949)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,452,949 | 56,468,437 |
| essv6994877 | Remapped | Perfect | NC_000010.10:g.(?_ 56452949)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,452,949 | 56,468,437 |
| essv6994879 | Remapped | Perfect | NC_000010.10:g.(?_ 56452949)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,452,949 | 56,468,437 |
| essv6994880 | Remapped | Perfect | NC_000010.10:g.(?_ 56452949)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,452,949 | 56,468,437 |
| essv6994881 | Remapped | Perfect | NC_000010.10:g.(?_ 56452949)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,452,949 | 56,468,437 |
| essv6994882 | Remapped | Perfect | NC_000010.10:g.(?_ 56452949)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,452,949 | 56,468,437 |
| essv6994883 | Remapped | Perfect | NC_000010.10:g.(?_ 56452949)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,452,949 | 56,468,437 |
| essv6994884 | Remapped | Perfect | NC_000010.10:g.(?_ 56452949)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,452,949 | 56,468,437 |
| essv6994885 | Remapped | Perfect | NC_000010.10:g.(?_ 56452949)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,452,949 | 56,468,437 |
| essv6994886 | Remapped | Perfect | NC_000010.10:g.(?_ 56452949)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,452,949 | 56,468,437 |
| essv6994887 | Remapped | Perfect | NC_000010.10:g.(?_ 56456787)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,456,787 | 56,468,437 |
| essv6994888 | Remapped | Perfect | NC_000010.10:g.(?_ 56456787)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,456,787 | 56,468,437 |
| essv6994890 | Remapped | Perfect | NC_000010.10:g.(?_ 56456787)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,456,787 | 56,468,437 |
| essv6994891 | Remapped | Perfect | NC_000010.10:g.(?_ 56456787)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,456,787 | 56,468,437 |
| essv6994892 | Remapped | Perfect | NC_000010.10:g.(?_ 56456787)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,456,787 | 56,468,437 |
| essv6994893 | Remapped | Perfect | NC_000010.10:g.(?_ 56456787)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,456,787 | 56,468,437 |
| essv6994894 | Remapped | Perfect | NC_000010.10:g.(?_ 56461325)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,461,325 | 56,468,437 |
| essv6994895 | Remapped | Perfect | NC_000010.10:g.(?_ 56461325)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,461,325 | 56,468,437 |
| essv6994896 | Remapped | Perfect | NC_000010.10:g.(?_ 56461325)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,461,325 | 56,468,437 |
| essv6994897 | Remapped | Perfect | NC_000010.10:g.(?_ 56461325)_(5646843 7_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,461,325 | 56,468,437 |
| essv6994875 | Submitted genomic | NC_000010.9:g.(?_5 6122955)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,122,955 | 56,138,443 | ||
| essv6994876 | Submitted genomic | NC_000010.9:g.(?_5 6122955)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,122,955 | 56,138,443 | ||
| essv6994877 | Submitted genomic | NC_000010.9:g.(?_5 6122955)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,122,955 | 56,138,443 | ||
| essv6994879 | Submitted genomic | NC_000010.9:g.(?_5 6122955)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,122,955 | 56,138,443 | ||
| essv6994880 | Submitted genomic | NC_000010.9:g.(?_5 6122955)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,122,955 | 56,138,443 | ||
| essv6994881 | Submitted genomic | NC_000010.9:g.(?_5 6122955)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,122,955 | 56,138,443 | ||
| essv6994882 | Submitted genomic | NC_000010.9:g.(?_5 6122955)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,122,955 | 56,138,443 | ||
| essv6994883 | Submitted genomic | NC_000010.9:g.(?_5 6122955)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,122,955 | 56,138,443 | ||
| essv6994884 | Submitted genomic | NC_000010.9:g.(?_5 6122955)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,122,955 | 56,138,443 | ||
| essv6994885 | Submitted genomic | NC_000010.9:g.(?_5 6122955)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,122,955 | 56,138,443 | ||
| essv6994886 | Submitted genomic | NC_000010.9:g.(?_5 6122955)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,122,955 | 56,138,443 | ||
| essv6994887 | Submitted genomic | NC_000010.9:g.(?_5 6126793)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,126,793 | 56,138,443 | ||
| essv6994888 | Submitted genomic | NC_000010.9:g.(?_5 6126793)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,126,793 | 56,138,443 | ||
| essv6994890 | Submitted genomic | NC_000010.9:g.(?_5 6126793)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,126,793 | 56,138,443 | ||
| essv6994891 | Submitted genomic | NC_000010.9:g.(?_5 6126793)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,126,793 | 56,138,443 | ||
| essv6994892 | Submitted genomic | NC_000010.9:g.(?_5 6126793)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,126,793 | 56,138,443 | ||
| essv6994893 | Submitted genomic | NC_000010.9:g.(?_5 6126793)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,126,793 | 56,138,443 | ||
| essv6994894 | Submitted genomic | NC_000010.9:g.(?_5 6131331)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,131,331 | 56,138,443 | ||
| essv6994895 | Submitted genomic | NC_000010.9:g.(?_5 6131331)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,131,331 | 56,138,443 | ||
| essv6994896 | Submitted genomic | NC_000010.9:g.(?_5 6131331)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,131,331 | 56,138,443 | ||
| essv6994897 | Submitted genomic | NC_000010.9:g.(?_5 6131331)_(56138443 _?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,131,331 | 56,138,443 |