esv2760192
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:13
- Validation:Not tested
- Clinical Assertions: No
- Region Size:23,410
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 252 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 252 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 112 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2760192 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 124,028,808 | 124,052,217 |
| esv2760192 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 123,899,515 | 123,922,924 |
| esv2760192 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 123,404,725 | 123,428,134 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7020268 | copy number loss | RW_0608 | SNP array | SNP genotyping analysis | 51 |
| essv7020269 | copy number loss | RW_0021 | SNP array | SNP genotyping analysis | 61 |
| essv7020270 | copy number loss | RW_0025 | SNP array | SNP genotyping analysis | 59 |
| essv7020271 | copy number loss | RW_0063 | SNP array | SNP genotyping analysis | 41 |
| essv7020272 | copy number loss | RW_0108 | SNP array | SNP genotyping analysis | 33 |
| essv7020273 | copy number loss | RW_0203 | SNP array | SNP genotyping analysis | 69 |
| essv7020274 | copy number loss | RW_0260 | SNP array | SNP genotyping analysis | 46 |
| essv7020275 | copy number loss | RW_0269 | SNP array | SNP genotyping analysis | 44 |
| essv7020276 | copy number loss | RW_0595 | SNP array | SNP genotyping analysis | 49 |
| essv7020278 | copy number loss | RW_0669 | SNP array | SNP genotyping analysis | 43 |
| essv7020279 | copy number loss | RW_0069 | SNP array | SNP genotyping analysis | 42 |
| essv7020280 | copy number loss | RW_0256 | SNP array | SNP genotyping analysis | 38 |
| essv7020281 | copy number loss | RW_0210 | SNP array | SNP genotyping analysis | 50 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7020268 | Remapped | Perfect | NC_000011.10:g.(?_ 124028808)_(124050 170_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 124,028,808 | 124,050,170 |
| essv7020269 | Remapped | Perfect | NC_000011.10:g.(?_ 124039156)_(124050 170_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 124,039,156 | 124,050,170 |
| essv7020270 | Remapped | Perfect | NC_000011.10:g.(?_ 124039156)_(124050 170_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 124,039,156 | 124,050,170 |
| essv7020271 | Remapped | Perfect | NC_000011.10:g.(?_ 124039156)_(124050 170_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 124,039,156 | 124,050,170 |
| essv7020272 | Remapped | Perfect | NC_000011.10:g.(?_ 124039156)_(124050 170_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 124,039,156 | 124,050,170 |
| essv7020273 | Remapped | Perfect | NC_000011.10:g.(?_ 124039156)_(124050 170_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 124,039,156 | 124,050,170 |
| essv7020274 | Remapped | Perfect | NC_000011.10:g.(?_ 124039156)_(124050 170_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 124,039,156 | 124,050,170 |
| essv7020275 | Remapped | Perfect | NC_000011.10:g.(?_ 124039156)_(124050 170_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 124,039,156 | 124,050,170 |
| essv7020276 | Remapped | Perfect | NC_000011.10:g.(?_ 124039156)_(124050 170_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 124,039,156 | 124,050,170 |
| essv7020278 | Remapped | Perfect | NC_000011.10:g.(?_ 124039156)_(124050 170_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 124,039,156 | 124,050,170 |
| essv7020279 | Remapped | Perfect | NC_000011.10:g.(?_ 124039156)_(124050 772_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 124,039,156 | 124,050,772 |
| essv7020280 | Remapped | Perfect | NC_000011.10:g.(?_ 124039156)_(124050 862_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 124,039,156 | 124,050,862 |
| essv7020281 | Remapped | Perfect | NC_000011.10:g.(?_ 124039156)_(124052 217_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 124,039,156 | 124,052,217 |
| essv7020268 | Remapped | Perfect | NC_000011.9:g.(?_1 23899515)_(1239208 77_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 123,899,515 | 123,920,877 |
| essv7020269 | Remapped | Perfect | NC_000011.9:g.(?_1 23909863)_(1239208 77_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 123,909,863 | 123,920,877 |
| essv7020270 | Remapped | Perfect | NC_000011.9:g.(?_1 23909863)_(1239208 77_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 123,909,863 | 123,920,877 |
| essv7020271 | Remapped | Perfect | NC_000011.9:g.(?_1 23909863)_(1239208 77_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 123,909,863 | 123,920,877 |
| essv7020272 | Remapped | Perfect | NC_000011.9:g.(?_1 23909863)_(1239208 77_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 123,909,863 | 123,920,877 |
| essv7020273 | Remapped | Perfect | NC_000011.9:g.(?_1 23909863)_(1239208 77_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 123,909,863 | 123,920,877 |
| essv7020274 | Remapped | Perfect | NC_000011.9:g.(?_1 23909863)_(1239208 77_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 123,909,863 | 123,920,877 |
| essv7020275 | Remapped | Perfect | NC_000011.9:g.(?_1 23909863)_(1239208 77_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 123,909,863 | 123,920,877 |
| essv7020276 | Remapped | Perfect | NC_000011.9:g.(?_1 23909863)_(1239208 77_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 123,909,863 | 123,920,877 |
| essv7020278 | Remapped | Perfect | NC_000011.9:g.(?_1 23909863)_(1239208 77_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 123,909,863 | 123,920,877 |
| essv7020279 | Remapped | Perfect | NC_000011.9:g.(?_1 23909863)_(1239214 79_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 123,909,863 | 123,921,479 |
| essv7020280 | Remapped | Perfect | NC_000011.9:g.(?_1 23909863)_(1239215 69_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 123,909,863 | 123,921,569 |
| essv7020281 | Remapped | Perfect | NC_000011.9:g.(?_1 23909863)_(1239229 24_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 123,909,863 | 123,922,924 |
| essv7020268 | Submitted genomic | NC_000011.8:g.(?_1 23404725)_(1234260 87_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 123,404,725 | 123,426,087 | ||
| essv7020269 | Submitted genomic | NC_000011.8:g.(?_1 23415073)_(1234260 87_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 123,415,073 | 123,426,087 | ||
| essv7020270 | Submitted genomic | NC_000011.8:g.(?_1 23415073)_(1234260 87_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 123,415,073 | 123,426,087 | ||
| essv7020271 | Submitted genomic | NC_000011.8:g.(?_1 23415073)_(1234260 87_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 123,415,073 | 123,426,087 | ||
| essv7020272 | Submitted genomic | NC_000011.8:g.(?_1 23415073)_(1234260 87_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 123,415,073 | 123,426,087 | ||
| essv7020273 | Submitted genomic | NC_000011.8:g.(?_1 23415073)_(1234260 87_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 123,415,073 | 123,426,087 | ||
| essv7020274 | Submitted genomic | NC_000011.8:g.(?_1 23415073)_(1234260 87_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 123,415,073 | 123,426,087 | ||
| essv7020275 | Submitted genomic | NC_000011.8:g.(?_1 23415073)_(1234260 87_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 123,415,073 | 123,426,087 | ||
| essv7020276 | Submitted genomic | NC_000011.8:g.(?_1 23415073)_(1234260 87_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 123,415,073 | 123,426,087 | ||
| essv7020278 | Submitted genomic | NC_000011.8:g.(?_1 23415073)_(1234260 87_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 123,415,073 | 123,426,087 | ||
| essv7020279 | Submitted genomic | NC_000011.8:g.(?_1 23415073)_(1234266 89_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 123,415,073 | 123,426,689 | ||
| essv7020280 | Submitted genomic | NC_000011.8:g.(?_1 23415073)_(1234267 79_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 123,415,073 | 123,426,779 | ||
| essv7020281 | Submitted genomic | NC_000011.8:g.(?_1 23415073)_(1234281 34_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 123,415,073 | 123,428,134 |