esv2760477
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:14
- Validation:Not tested
- Clinical Assertions: No
- Region Size:473
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 414 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 414 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 252 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2760477 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 107,367,930 | 107,368,402 |
| esv2760477 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 107,238,656 | 107,239,128 |
| esv2760477 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 106,743,866 | 106,744,338 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv6996278 | copy number loss | SW_0086 | SNP array | SNP genotyping analysis | 50 |
| essv6996279 | copy number loss | SW_0089 | SNP array | SNP genotyping analysis | 47 |
| essv6996280 | copy number loss | SW_0786 | SNP array | SNP genotyping analysis | 48 |
| essv6996281 | copy number loss | SW_0862 | SNP array | SNP genotyping analysis | 36 |
| essv6996282 | copy number loss | SW_1003 | SNP array | SNP genotyping analysis | 34 |
| essv6996283 | copy number loss | SW_1020 | SNP array | SNP genotyping analysis | 32 |
| essv6996284 | copy number loss | SW_1082 | SNP array | SNP genotyping analysis | 39 |
| essv6996285 | copy number loss | SW_1090 | SNP array | SNP genotyping analysis | 23 |
| essv6996286 | copy number loss | SW_1115 | SNP array | SNP genotyping analysis | 33 |
| essv6996287 | copy number loss | SW_1149 | SNP array | SNP genotyping analysis | 34 |
| essv6996289 | copy number loss | SW_1258 | SNP array | SNP genotyping analysis | 40 |
| essv6996290 | copy number gain | SW_1290 | SNP array | SNP genotyping analysis | 54 |
| essv6996291 | copy number loss | SW_1323 | SNP array | SNP genotyping analysis | 29 |
| essv6996292 | copy number loss | SW_1392 | SNP array | SNP genotyping analysis | 32 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv6996278 | Remapped | Perfect | NC_000011.10:g.(?_ 107367930)_(107368 402_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,367,930 | 107,368,402 |
| essv6996279 | Remapped | Perfect | NC_000011.10:g.(?_ 107367930)_(107368 402_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,367,930 | 107,368,402 |
| essv6996280 | Remapped | Perfect | NC_000011.10:g.(?_ 107367930)_(107368 402_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,367,930 | 107,368,402 |
| essv6996281 | Remapped | Perfect | NC_000011.10:g.(?_ 107367930)_(107368 402_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,367,930 | 107,368,402 |
| essv6996282 | Remapped | Perfect | NC_000011.10:g.(?_ 107367930)_(107368 402_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,367,930 | 107,368,402 |
| essv6996283 | Remapped | Perfect | NC_000011.10:g.(?_ 107367930)_(107368 402_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,367,930 | 107,368,402 |
| essv6996284 | Remapped | Perfect | NC_000011.10:g.(?_ 107367930)_(107368 402_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,367,930 | 107,368,402 |
| essv6996285 | Remapped | Perfect | NC_000011.10:g.(?_ 107367930)_(107368 402_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,367,930 | 107,368,402 |
| essv6996286 | Remapped | Perfect | NC_000011.10:g.(?_ 107367930)_(107368 402_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,367,930 | 107,368,402 |
| essv6996287 | Remapped | Perfect | NC_000011.10:g.(?_ 107367930)_(107368 402_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,367,930 | 107,368,402 |
| essv6996289 | Remapped | Perfect | NC_000011.10:g.(?_ 107367930)_(107368 402_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,367,930 | 107,368,402 |
| essv6996290 | Remapped | Perfect | NC_000011.10:g.(?_ 107367930)_(107368 402_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,367,930 | 107,368,402 |
| essv6996291 | Remapped | Perfect | NC_000011.10:g.(?_ 107367930)_(107368 402_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,367,930 | 107,368,402 |
| essv6996292 | Remapped | Perfect | NC_000011.10:g.(?_ 107367930)_(107368 402_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 107,367,930 | 107,368,402 |
| essv6996278 | Remapped | Perfect | NC_000011.9:g.(?_1 07238656)_(1072391 28_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,238,656 | 107,239,128 |
| essv6996279 | Remapped | Perfect | NC_000011.9:g.(?_1 07238656)_(1072391 28_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,238,656 | 107,239,128 |
| essv6996280 | Remapped | Perfect | NC_000011.9:g.(?_1 07238656)_(1072391 28_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,238,656 | 107,239,128 |
| essv6996281 | Remapped | Perfect | NC_000011.9:g.(?_1 07238656)_(1072391 28_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,238,656 | 107,239,128 |
| essv6996282 | Remapped | Perfect | NC_000011.9:g.(?_1 07238656)_(1072391 28_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,238,656 | 107,239,128 |
| essv6996283 | Remapped | Perfect | NC_000011.9:g.(?_1 07238656)_(1072391 28_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,238,656 | 107,239,128 |
| essv6996284 | Remapped | Perfect | NC_000011.9:g.(?_1 07238656)_(1072391 28_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,238,656 | 107,239,128 |
| essv6996285 | Remapped | Perfect | NC_000011.9:g.(?_1 07238656)_(1072391 28_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,238,656 | 107,239,128 |
| essv6996286 | Remapped | Perfect | NC_000011.9:g.(?_1 07238656)_(1072391 28_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,238,656 | 107,239,128 |
| essv6996287 | Remapped | Perfect | NC_000011.9:g.(?_1 07238656)_(1072391 28_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,238,656 | 107,239,128 |
| essv6996289 | Remapped | Perfect | NC_000011.9:g.(?_1 07238656)_(1072391 28_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,238,656 | 107,239,128 |
| essv6996290 | Remapped | Perfect | NC_000011.9:g.(?_1 07238656)_(1072391 28_?)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,238,656 | 107,239,128 |
| essv6996291 | Remapped | Perfect | NC_000011.9:g.(?_1 07238656)_(1072391 28_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,238,656 | 107,239,128 |
| essv6996292 | Remapped | Perfect | NC_000011.9:g.(?_1 07238656)_(1072391 28_?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 107,238,656 | 107,239,128 |
| essv6996278 | Submitted genomic | NC_000011.8:g.(?_1 06743866)_(1067443 38_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,743,866 | 106,744,338 | ||
| essv6996279 | Submitted genomic | NC_000011.8:g.(?_1 06743866)_(1067443 38_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,743,866 | 106,744,338 | ||
| essv6996280 | Submitted genomic | NC_000011.8:g.(?_1 06743866)_(1067443 38_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,743,866 | 106,744,338 | ||
| essv6996281 | Submitted genomic | NC_000011.8:g.(?_1 06743866)_(1067443 38_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,743,866 | 106,744,338 | ||
| essv6996282 | Submitted genomic | NC_000011.8:g.(?_1 06743866)_(1067443 38_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,743,866 | 106,744,338 | ||
| essv6996283 | Submitted genomic | NC_000011.8:g.(?_1 06743866)_(1067443 38_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,743,866 | 106,744,338 | ||
| essv6996284 | Submitted genomic | NC_000011.8:g.(?_1 06743866)_(1067443 38_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,743,866 | 106,744,338 | ||
| essv6996285 | Submitted genomic | NC_000011.8:g.(?_1 06743866)_(1067443 38_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,743,866 | 106,744,338 | ||
| essv6996286 | Submitted genomic | NC_000011.8:g.(?_1 06743866)_(1067443 38_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,743,866 | 106,744,338 | ||
| essv6996287 | Submitted genomic | NC_000011.8:g.(?_1 06743866)_(1067443 38_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,743,866 | 106,744,338 | ||
| essv6996289 | Submitted genomic | NC_000011.8:g.(?_1 06743866)_(1067443 38_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,743,866 | 106,744,338 | ||
| essv6996290 | Submitted genomic | NC_000011.8:g.(?_1 06743866)_(1067443 38_?)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,743,866 | 106,744,338 | ||
| essv6996291 | Submitted genomic | NC_000011.8:g.(?_1 06743866)_(1067443 38_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,743,866 | 106,744,338 | ||
| essv6996292 | Submitted genomic | NC_000011.8:g.(?_1 06743866)_(1067443 38_?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 106,743,866 | 106,744,338 |