esv2760481
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:17
- Validation:Not tested
- Clinical Assertions: No
- Region Size:8,975
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 485 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 485 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 270 SVs from 12 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2760481 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 73,757,807 | 73,766,781 |
| esv2760481 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000018.9 | Chr18 | 71,425,042 | 71,434,016 |
| esv2760481 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000018.8 | Chr18 | 69,576,022 | 69,584,996 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7025260 | copy number loss | RW_0184 | SNP array | SNP genotyping analysis | 47 |
| essv7025261 | copy number loss | RW_0249 | SNP array | SNP genotyping analysis | 61 |
| essv7025262 | copy number loss | RW_0625 | SNP array | SNP genotyping analysis | 50 |
| essv7025263 | copy number loss | RW_0221 | SNP array | SNP genotyping analysis | 69 |
| essv7025264 | copy number loss | RW_0005 | SNP array | SNP genotyping analysis | 47 |
| essv7025265 | copy number loss | RW_0138 | SNP array | SNP genotyping analysis | 34 |
| essv7025266 | copy number loss | RW_0146 | SNP array | SNP genotyping analysis | 55 |
| essv7025268 | copy number loss | RW_0173 | SNP array | SNP genotyping analysis | 52 |
| essv7025269 | copy number loss | RW_0176 | SNP array | SNP genotyping analysis | 58 |
| essv7025270 | copy number loss | RW_0222 | SNP array | SNP genotyping analysis | 47 |
| essv7025271 | copy number loss | RW_0231 | SNP array | SNP genotyping analysis | 64 |
| essv7025272 | copy number loss | RW_0549 | SNP array | SNP genotyping analysis | 45 |
| essv7025273 | copy number loss | RW_0595 | SNP array | SNP genotyping analysis | 49 |
| essv7025274 | copy number loss | RW_0617 | SNP array | SNP genotyping analysis | 42 |
| essv7025275 | copy number loss | RW_0621 | SNP array | SNP genotyping analysis | 46 |
| essv7025276 | copy number loss | RW_0255 | SNP array | SNP genotyping analysis | 67 |
| essv7025277 | copy number loss | RW_0629 | SNP array | SNP genotyping analysis | 48 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7025260 | Remapped | Perfect | NC_000018.10:g.(?_ 73757807)_(7376411 3_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 73,757,807 | 73,764,113 |
| essv7025261 | Remapped | Perfect | NC_000018.10:g.(?_ 73757807)_(7376411 3_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 73,757,807 | 73,764,113 |
| essv7025262 | Remapped | Perfect | NC_000018.10:g.(?_ 73757807)_(7376411 3_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 73,757,807 | 73,764,113 |
| essv7025263 | Remapped | Perfect | NC_000018.10:g.(?_ 73757807)_(7376678 1_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 73,757,807 | 73,766,781 |
| essv7025264 | Remapped | Perfect | NC_000018.10:g.(?_ 73760658)_(7376411 3_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 73,760,658 | 73,764,113 |
| essv7025265 | Remapped | Perfect | NC_000018.10:g.(?_ 73760658)_(7376411 3_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 73,760,658 | 73,764,113 |
| essv7025266 | Remapped | Perfect | NC_000018.10:g.(?_ 73760658)_(7376411 3_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 73,760,658 | 73,764,113 |
| essv7025268 | Remapped | Perfect | NC_000018.10:g.(?_ 73760658)_(7376411 3_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 73,760,658 | 73,764,113 |
| essv7025269 | Remapped | Perfect | NC_000018.10:g.(?_ 73760658)_(7376411 3_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 73,760,658 | 73,764,113 |
| essv7025270 | Remapped | Perfect | NC_000018.10:g.(?_ 73760658)_(7376411 3_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 73,760,658 | 73,764,113 |
| essv7025271 | Remapped | Perfect | NC_000018.10:g.(?_ 73760658)_(7376411 3_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 73,760,658 | 73,764,113 |
| essv7025272 | Remapped | Perfect | NC_000018.10:g.(?_ 73760658)_(7376411 3_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 73,760,658 | 73,764,113 |
| essv7025273 | Remapped | Perfect | NC_000018.10:g.(?_ 73760658)_(7376411 3_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 73,760,658 | 73,764,113 |
| essv7025274 | Remapped | Perfect | NC_000018.10:g.(?_ 73760658)_(7376411 3_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 73,760,658 | 73,764,113 |
| essv7025275 | Remapped | Perfect | NC_000018.10:g.(?_ 73760658)_(7376411 3_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 73,760,658 | 73,764,113 |
| essv7025276 | Remapped | Perfect | NC_000018.10:g.(?_ 73760658)_(7376678 1_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 73,760,658 | 73,766,781 |
| essv7025277 | Remapped | Perfect | NC_000018.10:g.(?_ 73760658)_(7376678 1_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 73,760,658 | 73,766,781 |
| essv7025260 | Remapped | Perfect | NC_000018.9:g.(?_7 1425042)_(71431348 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 71,425,042 | 71,431,348 |
| essv7025261 | Remapped | Perfect | NC_000018.9:g.(?_7 1425042)_(71431348 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 71,425,042 | 71,431,348 |
| essv7025262 | Remapped | Perfect | NC_000018.9:g.(?_7 1425042)_(71431348 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 71,425,042 | 71,431,348 |
| essv7025263 | Remapped | Perfect | NC_000018.9:g.(?_7 1425042)_(71434016 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 71,425,042 | 71,434,016 |
| essv7025264 | Remapped | Perfect | NC_000018.9:g.(?_7 1427893)_(71431348 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 71,427,893 | 71,431,348 |
| essv7025265 | Remapped | Perfect | NC_000018.9:g.(?_7 1427893)_(71431348 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 71,427,893 | 71,431,348 |
| essv7025266 | Remapped | Perfect | NC_000018.9:g.(?_7 1427893)_(71431348 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 71,427,893 | 71,431,348 |
| essv7025268 | Remapped | Perfect | NC_000018.9:g.(?_7 1427893)_(71431348 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 71,427,893 | 71,431,348 |
| essv7025269 | Remapped | Perfect | NC_000018.9:g.(?_7 1427893)_(71431348 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 71,427,893 | 71,431,348 |
| essv7025270 | Remapped | Perfect | NC_000018.9:g.(?_7 1427893)_(71431348 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 71,427,893 | 71,431,348 |
| essv7025271 | Remapped | Perfect | NC_000018.9:g.(?_7 1427893)_(71431348 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 71,427,893 | 71,431,348 |
| essv7025272 | Remapped | Perfect | NC_000018.9:g.(?_7 1427893)_(71431348 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 71,427,893 | 71,431,348 |
| essv7025273 | Remapped | Perfect | NC_000018.9:g.(?_7 1427893)_(71431348 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 71,427,893 | 71,431,348 |
| essv7025274 | Remapped | Perfect | NC_000018.9:g.(?_7 1427893)_(71431348 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 71,427,893 | 71,431,348 |
| essv7025275 | Remapped | Perfect | NC_000018.9:g.(?_7 1427893)_(71431348 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 71,427,893 | 71,431,348 |
| essv7025276 | Remapped | Perfect | NC_000018.9:g.(?_7 1427893)_(71434016 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 71,427,893 | 71,434,016 |
| essv7025277 | Remapped | Perfect | NC_000018.9:g.(?_7 1427893)_(71434016 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 71,427,893 | 71,434,016 |
| essv7025260 | Submitted genomic | NC_000018.8:g.(?_6 9576022)_(69582328 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 69,576,022 | 69,582,328 | ||
| essv7025261 | Submitted genomic | NC_000018.8:g.(?_6 9576022)_(69582328 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 69,576,022 | 69,582,328 | ||
| essv7025262 | Submitted genomic | NC_000018.8:g.(?_6 9576022)_(69582328 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 69,576,022 | 69,582,328 | ||
| essv7025263 | Submitted genomic | NC_000018.8:g.(?_6 9576022)_(69584996 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 69,576,022 | 69,584,996 | ||
| essv7025264 | Submitted genomic | NC_000018.8:g.(?_6 9578873)_(69582328 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 69,578,873 | 69,582,328 | ||
| essv7025265 | Submitted genomic | NC_000018.8:g.(?_6 9578873)_(69582328 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 69,578,873 | 69,582,328 | ||
| essv7025266 | Submitted genomic | NC_000018.8:g.(?_6 9578873)_(69582328 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 69,578,873 | 69,582,328 | ||
| essv7025268 | Submitted genomic | NC_000018.8:g.(?_6 9578873)_(69582328 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 69,578,873 | 69,582,328 | ||
| essv7025269 | Submitted genomic | NC_000018.8:g.(?_6 9578873)_(69582328 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 69,578,873 | 69,582,328 | ||
| essv7025270 | Submitted genomic | NC_000018.8:g.(?_6 9578873)_(69582328 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 69,578,873 | 69,582,328 | ||
| essv7025271 | Submitted genomic | NC_000018.8:g.(?_6 9578873)_(69582328 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 69,578,873 | 69,582,328 | ||
| essv7025272 | Submitted genomic | NC_000018.8:g.(?_6 9578873)_(69582328 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 69,578,873 | 69,582,328 | ||
| essv7025273 | Submitted genomic | NC_000018.8:g.(?_6 9578873)_(69582328 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 69,578,873 | 69,582,328 | ||
| essv7025274 | Submitted genomic | NC_000018.8:g.(?_6 9578873)_(69582328 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 69,578,873 | 69,582,328 | ||
| essv7025275 | Submitted genomic | NC_000018.8:g.(?_6 9578873)_(69582328 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 69,578,873 | 69,582,328 | ||
| essv7025276 | Submitted genomic | NC_000018.8:g.(?_6 9578873)_(69584996 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 69,578,873 | 69,584,996 | ||
| essv7025277 | Submitted genomic | NC_000018.8:g.(?_6 9578873)_(69584996 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 69,578,873 | 69,584,996 |