esv2760544
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:45,594
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 365 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 365 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 127 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2760544 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 99,649,099 | 99,694,692 |
| esv2760544 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 99,519,830 | 99,565,423 |
| esv2760544 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 99,025,040 | 99,070,633 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv6996254 | copy number loss | SW_0833 | SNP array | SNP genotyping analysis | 38 |
| essv6996256 | copy number loss | SW_1021 | SNP array | SNP genotyping analysis | 40 |
| essv6996257 | copy number loss | SW_1046 | SNP array | SNP genotyping analysis | 32 |
| essv6996258 | copy number loss | SW_1076 | SNP array | SNP genotyping analysis | 27 |
| essv6996259 | copy number loss | SW_1100 | SNP array | SNP genotyping analysis | 27 |
| essv6996260 | copy number loss | SW_1249 | SNP array | SNP genotyping analysis | 41 |
| essv6996261 | copy number loss | SW_1404 | SNP array | SNP genotyping analysis | 44 |
| essv6996262 | copy number loss | SW_1415 | SNP array | SNP genotyping analysis | 24 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv6996254 | Remapped | Perfect | NC_000011.10:g.(?_ 99649099)_(9969469 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 99,649,099 | 99,694,692 |
| essv6996256 | Remapped | Perfect | NC_000011.10:g.(?_ 99649099)_(9969469 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 99,649,099 | 99,694,692 |
| essv6996257 | Remapped | Perfect | NC_000011.10:g.(?_ 99649099)_(9969469 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 99,649,099 | 99,694,692 |
| essv6996258 | Remapped | Perfect | NC_000011.10:g.(?_ 99649099)_(9969469 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 99,649,099 | 99,694,692 |
| essv6996259 | Remapped | Perfect | NC_000011.10:g.(?_ 99649099)_(9969469 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 99,649,099 | 99,694,692 |
| essv6996260 | Remapped | Perfect | NC_000011.10:g.(?_ 99649099)_(9969469 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 99,649,099 | 99,694,692 |
| essv6996261 | Remapped | Perfect | NC_000011.10:g.(?_ 99649099)_(9969469 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 99,649,099 | 99,694,692 |
| essv6996262 | Remapped | Perfect | NC_000011.10:g.(?_ 99649099)_(9969469 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 99,649,099 | 99,694,692 |
| essv6996254 | Remapped | Perfect | NC_000011.9:g.(?_9 9519830)_(99565423 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 99,519,830 | 99,565,423 |
| essv6996256 | Remapped | Perfect | NC_000011.9:g.(?_9 9519830)_(99565423 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 99,519,830 | 99,565,423 |
| essv6996257 | Remapped | Perfect | NC_000011.9:g.(?_9 9519830)_(99565423 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 99,519,830 | 99,565,423 |
| essv6996258 | Remapped | Perfect | NC_000011.9:g.(?_9 9519830)_(99565423 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 99,519,830 | 99,565,423 |
| essv6996259 | Remapped | Perfect | NC_000011.9:g.(?_9 9519830)_(99565423 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 99,519,830 | 99,565,423 |
| essv6996260 | Remapped | Perfect | NC_000011.9:g.(?_9 9519830)_(99565423 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 99,519,830 | 99,565,423 |
| essv6996261 | Remapped | Perfect | NC_000011.9:g.(?_9 9519830)_(99565423 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 99,519,830 | 99,565,423 |
| essv6996262 | Remapped | Perfect | NC_000011.9:g.(?_9 9519830)_(99565423 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 99,519,830 | 99,565,423 |
| essv6996254 | Submitted genomic | NC_000011.8:g.(?_9 9025040)_(99070633 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 99,025,040 | 99,070,633 | ||
| essv6996256 | Submitted genomic | NC_000011.8:g.(?_9 9025040)_(99070633 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 99,025,040 | 99,070,633 | ||
| essv6996257 | Submitted genomic | NC_000011.8:g.(?_9 9025040)_(99070633 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 99,025,040 | 99,070,633 | ||
| essv6996258 | Submitted genomic | NC_000011.8:g.(?_9 9025040)_(99070633 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 99,025,040 | 99,070,633 | ||
| essv6996259 | Submitted genomic | NC_000011.8:g.(?_9 9025040)_(99070633 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 99,025,040 | 99,070,633 | ||
| essv6996260 | Submitted genomic | NC_000011.8:g.(?_9 9025040)_(99070633 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 99,025,040 | 99,070,633 | ||
| essv6996261 | Submitted genomic | NC_000011.8:g.(?_9 9025040)_(99070633 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 99,025,040 | 99,070,633 | ||
| essv6996262 | Submitted genomic | NC_000011.8:g.(?_9 9025040)_(99070633 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 99,025,040 | 99,070,633 |