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dbVar

Database of genomic structural variation

esv2760577

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:15,745

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 203 SVs from 40 studies. See in: genome view

Remapped(Score: Perfect):107,241,544-107,257,288

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2760577	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	107,241,544	107,257,288
esv2760577	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000011.9	Chr11	107,112,270	107,128,014
esv2760577	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000011.8	Chr11	106,617,480	106,633,224

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv6996274	copy number loss	SW_1478	SNP array	SNP genotyping analysis	39
essv6996275	copy number loss	SW_0063	SNP array	SNP genotyping analysis	48
essv6996276	copy number loss	SW_0584	SNP array	SNP genotyping analysis	35

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv6996274	Remapped	Perfect	NC_000011.10:g.(?_ 107241544)_(107257 288_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	107,241,544	107,257,288
essv6996275	Remapped	Perfect	NC_000011.10:g.(?_ 107242875)_(107257 288_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	107,242,875	107,257,288
essv6996276	Remapped	Perfect	NC_000011.10:g.(?_ 107242875)_(107257 288_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	107,242,875	107,257,288
essv6996274	Remapped	Perfect	NC_000011.9:g.(?_1 07112270)_(1071280 14_?)del	GRCh37.p13	First Pass	NC_000011.9	Chr11	107,112,270	107,128,014
essv6996275	Remapped	Perfect	NC_000011.9:g.(?_1 07113601)_(1071280 14_?)del	GRCh37.p13	First Pass	NC_000011.9	Chr11	107,113,601	107,128,014
essv6996276	Remapped	Perfect	NC_000011.9:g.(?_1 07113601)_(1071280 14_?)del	GRCh37.p13	First Pass	NC_000011.9	Chr11	107,113,601	107,128,014
essv6996274	Submitted genomic		NC_000011.8:g.(?_1 06617480)_(1066332 24_?)del	NCBI36 (hg18)		NC_000011.8	Chr11	106,617,480	106,633,224
essv6996275	Submitted genomic		NC_000011.8:g.(?_1 06618811)_(1066332 24_?)del	NCBI36 (hg18)		NC_000011.8	Chr11	106,618,811	106,633,224
essv6996276	Submitted genomic		NC_000011.8:g.(?_1 06618811)_(1066332 24_?)del	NCBI36 (hg18)		NC_000011.8	Chr11	106,618,811	106,633,224

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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