esv2760636
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:16
- Validation:Not tested
- Clinical Assertions: No
- Region Size:5,225
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 204 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 204 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 42 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2760636 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 29,418,334 | 29,423,558 |
| esv2760636 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 29,641,200 | 29,646,424 |
| esv2760636 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 29,494,704 | 29,499,928 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7007351 | copy number loss | RW_0292 | SNP array | SNP genotyping analysis | 43 |
| essv7007352 | copy number loss | RW_0065 | SNP array | SNP genotyping analysis | 48 |
| essv7007353 | copy number loss | RW_0082 | SNP array | SNP genotyping analysis | 38 |
| essv7007354 | copy number loss | RW_0117 | SNP array | SNP genotyping analysis | 52 |
| essv7007356 | copy number loss | RW_0141 | SNP array | SNP genotyping analysis | 44 |
| essv7007357 | copy number loss | RW_0146 | SNP array | SNP genotyping analysis | 55 |
| essv7007358 | copy number loss | RW_0164 | SNP array | SNP genotyping analysis | 45 |
| essv7007359 | copy number loss | RW_0178 | SNP array | SNP genotyping analysis | 71 |
| essv7007360 | copy number loss | RW_0184 | SNP array | SNP genotyping analysis | 47 |
| essv7007361 | copy number loss | RW_0203 | SNP array | SNP genotyping analysis | 69 |
| essv7007362 | copy number loss | RW_0216 | SNP array | SNP genotyping analysis | 76 |
| essv7007363 | copy number loss | RW_0258 | SNP array | SNP genotyping analysis | 70 |
| essv7007364 | copy number loss | RW_0267 | SNP array | SNP genotyping analysis | 40 |
| essv7007365 | copy number loss | RW_0539 | SNP array | SNP genotyping analysis | 47 |
| essv7007367 | copy number loss | RW_0655 | SNP array | SNP genotyping analysis | 45 |
| essv7007368 | copy number loss | RW_0573 | SNP array | SNP genotyping analysis | 43 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7007351 | Remapped | Perfect | NC_000002.12:g.(?_ 29418334)_(2942207 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 29,418,334 | 29,422,071 |
| essv7007352 | Remapped | Perfect | NC_000002.12:g.(?_ 29419008)_(2942207 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 29,419,008 | 29,422,071 |
| essv7007353 | Remapped | Perfect | NC_000002.12:g.(?_ 29419008)_(2942207 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 29,419,008 | 29,422,071 |
| essv7007354 | Remapped | Perfect | NC_000002.12:g.(?_ 29419008)_(2942207 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 29,419,008 | 29,422,071 |
| essv7007356 | Remapped | Perfect | NC_000002.12:g.(?_ 29419008)_(2942207 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 29,419,008 | 29,422,071 |
| essv7007357 | Remapped | Perfect | NC_000002.12:g.(?_ 29419008)_(2942207 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 29,419,008 | 29,422,071 |
| essv7007358 | Remapped | Perfect | NC_000002.12:g.(?_ 29419008)_(2942207 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 29,419,008 | 29,422,071 |
| essv7007359 | Remapped | Perfect | NC_000002.12:g.(?_ 29419008)_(2942207 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 29,419,008 | 29,422,071 |
| essv7007360 | Remapped | Perfect | NC_000002.12:g.(?_ 29419008)_(2942207 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 29,419,008 | 29,422,071 |
| essv7007361 | Remapped | Perfect | NC_000002.12:g.(?_ 29419008)_(2942207 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 29,419,008 | 29,422,071 |
| essv7007362 | Remapped | Perfect | NC_000002.12:g.(?_ 29419008)_(2942207 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 29,419,008 | 29,422,071 |
| essv7007363 | Remapped | Perfect | NC_000002.12:g.(?_ 29419008)_(2942207 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 29,419,008 | 29,422,071 |
| essv7007364 | Remapped | Perfect | NC_000002.12:g.(?_ 29419008)_(2942207 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 29,419,008 | 29,422,071 |
| essv7007365 | Remapped | Perfect | NC_000002.12:g.(?_ 29419008)_(2942207 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 29,419,008 | 29,422,071 |
| essv7007367 | Remapped | Perfect | NC_000002.12:g.(?_ 29419008)_(2942207 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 29,419,008 | 29,422,071 |
| essv7007368 | Remapped | Perfect | NC_000002.12:g.(?_ 29419008)_(2942355 8_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 29,419,008 | 29,423,558 |
| essv7007351 | Remapped | Perfect | NC_000002.11:g.(?_ 29641200)_(2964493 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 29,641,200 | 29,644,937 |
| essv7007352 | Remapped | Perfect | NC_000002.11:g.(?_ 29641874)_(2964493 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 29,641,874 | 29,644,937 |
| essv7007353 | Remapped | Perfect | NC_000002.11:g.(?_ 29641874)_(2964493 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 29,641,874 | 29,644,937 |
| essv7007354 | Remapped | Perfect | NC_000002.11:g.(?_ 29641874)_(2964493 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 29,641,874 | 29,644,937 |
| essv7007356 | Remapped | Perfect | NC_000002.11:g.(?_ 29641874)_(2964493 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 29,641,874 | 29,644,937 |
| essv7007357 | Remapped | Perfect | NC_000002.11:g.(?_ 29641874)_(2964493 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 29,641,874 | 29,644,937 |
| essv7007358 | Remapped | Perfect | NC_000002.11:g.(?_ 29641874)_(2964493 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 29,641,874 | 29,644,937 |
| essv7007359 | Remapped | Perfect | NC_000002.11:g.(?_ 29641874)_(2964493 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 29,641,874 | 29,644,937 |
| essv7007360 | Remapped | Perfect | NC_000002.11:g.(?_ 29641874)_(2964493 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 29,641,874 | 29,644,937 |
| essv7007361 | Remapped | Perfect | NC_000002.11:g.(?_ 29641874)_(2964493 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 29,641,874 | 29,644,937 |
| essv7007362 | Remapped | Perfect | NC_000002.11:g.(?_ 29641874)_(2964493 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 29,641,874 | 29,644,937 |
| essv7007363 | Remapped | Perfect | NC_000002.11:g.(?_ 29641874)_(2964493 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 29,641,874 | 29,644,937 |
| essv7007364 | Remapped | Perfect | NC_000002.11:g.(?_ 29641874)_(2964493 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 29,641,874 | 29,644,937 |
| essv7007365 | Remapped | Perfect | NC_000002.11:g.(?_ 29641874)_(2964493 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 29,641,874 | 29,644,937 |
| essv7007367 | Remapped | Perfect | NC_000002.11:g.(?_ 29641874)_(2964493 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 29,641,874 | 29,644,937 |
| essv7007368 | Remapped | Perfect | NC_000002.11:g.(?_ 29641874)_(2964642 4_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 29,641,874 | 29,646,424 |
| essv7007351 | Submitted genomic | NC_000002.10:g.(?_ 29494704)_(2949844 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 29,494,704 | 29,498,441 | ||
| essv7007352 | Submitted genomic | NC_000002.10:g.(?_ 29495378)_(2949844 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 29,495,378 | 29,498,441 | ||
| essv7007353 | Submitted genomic | NC_000002.10:g.(?_ 29495378)_(2949844 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 29,495,378 | 29,498,441 | ||
| essv7007354 | Submitted genomic | NC_000002.10:g.(?_ 29495378)_(2949844 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 29,495,378 | 29,498,441 | ||
| essv7007356 | Submitted genomic | NC_000002.10:g.(?_ 29495378)_(2949844 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 29,495,378 | 29,498,441 | ||
| essv7007357 | Submitted genomic | NC_000002.10:g.(?_ 29495378)_(2949844 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 29,495,378 | 29,498,441 | ||
| essv7007358 | Submitted genomic | NC_000002.10:g.(?_ 29495378)_(2949844 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 29,495,378 | 29,498,441 | ||
| essv7007359 | Submitted genomic | NC_000002.10:g.(?_ 29495378)_(2949844 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 29,495,378 | 29,498,441 | ||
| essv7007360 | Submitted genomic | NC_000002.10:g.(?_ 29495378)_(2949844 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 29,495,378 | 29,498,441 | ||
| essv7007361 | Submitted genomic | NC_000002.10:g.(?_ 29495378)_(2949844 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 29,495,378 | 29,498,441 | ||
| essv7007362 | Submitted genomic | NC_000002.10:g.(?_ 29495378)_(2949844 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 29,495,378 | 29,498,441 | ||
| essv7007363 | Submitted genomic | NC_000002.10:g.(?_ 29495378)_(2949844 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 29,495,378 | 29,498,441 | ||
| essv7007364 | Submitted genomic | NC_000002.10:g.(?_ 29495378)_(2949844 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 29,495,378 | 29,498,441 | ||
| essv7007365 | Submitted genomic | NC_000002.10:g.(?_ 29495378)_(2949844 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 29,495,378 | 29,498,441 | ||
| essv7007367 | Submitted genomic | NC_000002.10:g.(?_ 29495378)_(2949844 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 29,495,378 | 29,498,441 | ||
| essv7007368 | Submitted genomic | NC_000002.10:g.(?_ 29495378)_(2949992 8_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 29,495,378 | 29,499,928 |