esv2760907
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:25
- Validation:Not tested
- Clinical Assertions: No
- Region Size:7,918
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 374 SVs from 55 studies. See in: genome view
Overlapping variant regions from other studies: 374 SVs from 55 studies. See in: genome view
Overlapping variant regions from other studies: 204 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2760907 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 180,209,255 | 180,217,172 |
| esv2760907 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 181,130,408 | 181,138,325 |
| esv2760907 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 181,367,402 | 181,375,319 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7012318 | copy number loss | RW_0604 | SNP array | SNP genotyping analysis | 43 |
| essv7012319 | copy number loss | RW_0003 | SNP array | SNP genotyping analysis | 58 |
| essv7012320 | copy number loss | RW_0020 | SNP array | SNP genotyping analysis | 76 |
| essv7012321 | copy number loss | RW_0023 | SNP array | SNP genotyping analysis | 71 |
| essv7012323 | copy number loss | RW_0039 | SNP array | SNP genotyping analysis | 56 |
| essv7012324 | copy number loss | RW_0058 | SNP array | SNP genotyping analysis | 45 |
| essv7012325 | copy number loss | RW_0088 | SNP array | SNP genotyping analysis | 51 |
| essv7012326 | copy number loss | RW_0115 | SNP array | SNP genotyping analysis | 50 |
| essv7012327 | copy number loss | RW_0116 | SNP array | SNP genotyping analysis | 59 |
| essv7012328 | copy number loss | RW_0171 | SNP array | SNP genotyping analysis | 65 |
| essv7012329 | copy number loss | RW_0176 | SNP array | SNP genotyping analysis | 58 |
| essv7012330 | copy number loss | RW_0184 | SNP array | SNP genotyping analysis | 47 |
| essv7012331 | copy number loss | RW_0215 | SNP array | SNP genotyping analysis | 69 |
| essv7012332 | copy number loss | RW_0221 | SNP array | SNP genotyping analysis | 69 |
| essv7012334 | copy number loss | RW_0226 | SNP array | SNP genotyping analysis | 58 |
| essv7012335 | copy number loss | RW_0237 | SNP array | SNP genotyping analysis | 55 |
| essv7012336 | copy number loss | RW_0250 | SNP array | SNP genotyping analysis | 65 |
| essv7012337 | copy number loss | RW_0257 | SNP array | SNP genotyping analysis | 61 |
| essv7012338 | copy number loss | RW_0281 | SNP array | SNP genotyping analysis | 58 |
| essv7012339 | copy number loss | RW_0309 | SNP array | SNP genotyping analysis | 43 |
| essv7012340 | copy number loss | RW_0358 | SNP array | SNP genotyping analysis | 42 |
| essv7012341 | copy number loss | RW_0521 | SNP array | SNP genotyping analysis | 39 |
| essv7012342 | copy number loss | RW_0605 | SNP array | SNP genotyping analysis | 56 |
| essv7012343 | copy number loss | RW_0620 | SNP array | SNP genotyping analysis | 39 |
| essv7012345 | copy number loss | RW_0625 | SNP array | SNP genotyping analysis | 50 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7012318 | Remapped | Perfect | NC_000004.12:g.(?_ 180209255)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,209,255 | 180,217,172 |
| essv7012319 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012320 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012321 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012323 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012324 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012325 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012326 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012327 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012328 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012329 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012330 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012331 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012332 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012334 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012335 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012336 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012337 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012338 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012339 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012340 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012341 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012342 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012343 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012345 | Remapped | Perfect | NC_000004.12:g.(?_ 180215918)_(180217 172_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 180,215,918 | 180,217,172 |
| essv7012318 | Remapped | Perfect | NC_000004.11:g.(?_ 181130408)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,130,408 | 181,138,325 |
| essv7012319 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012320 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012321 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012323 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012324 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012325 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012326 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012327 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012328 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012329 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012330 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012331 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012332 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012334 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012335 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012336 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012337 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012338 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012339 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012340 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012341 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012342 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012343 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012345 | Remapped | Perfect | NC_000004.11:g.(?_ 181137071)_(181138 325_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 181,137,071 | 181,138,325 |
| essv7012318 | Submitted genomic | NC_000004.10:g.(?_ 181367402)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,367,402 | 181,375,319 | ||
| essv7012319 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012320 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012321 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012323 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012324 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012325 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012326 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012327 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012328 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012329 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012330 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012331 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012332 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012334 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012335 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012336 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012337 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012338 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012339 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012340 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012341 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012342 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012343 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 | ||
| essv7012345 | Submitted genomic | NC_000004.10:g.(?_ 181374065)_(181375 319_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 181,374,065 | 181,375,319 |