esv2760913
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:34,243
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 283 SVs from 51 studies. See in: genome view
Overlapping variant regions from other studies: 283 SVs from 51 studies. See in: genome view
Overlapping variant regions from other studies: 80 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2760913 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 87,273,018 | 87,307,260 |
| esv2760913 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 88,194,170 | 88,228,412 |
| esv2760913 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 88,413,194 | 88,447,436 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7011386 | copy number loss | RW_0011 | SNP array | SNP genotyping analysis | 53 |
| essv7011387 | copy number loss | RW_0256 | SNP array | SNP genotyping analysis | 38 |
| essv7011389 | copy number loss | RW_0601 | SNP array | SNP genotyping analysis | 51 |
| essv7011390 | copy number loss | RW_0629 | SNP array | SNP genotyping analysis | 48 |
| essv7011391 | copy number loss | RW_0275 | SNP array | SNP genotyping analysis | 61 |
| essv7011392 | copy number loss | RW_0296 | SNP array | SNP genotyping analysis | 35 |
| essv7011393 | copy number loss | RW_0616 | SNP array | SNP genotyping analysis | 46 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7011386 | Remapped | Perfect | NC_000004.12:g.(?_ 87273018)_(8730376 6_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 87,273,018 | 87,303,766 |
| essv7011387 | Remapped | Perfect | NC_000004.12:g.(?_ 87273018)_(8730376 6_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 87,273,018 | 87,303,766 |
| essv7011389 | Remapped | Perfect | NC_000004.12:g.(?_ 87273018)_(8730376 6_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 87,273,018 | 87,303,766 |
| essv7011390 | Remapped | Perfect | NC_000004.12:g.(?_ 87273018)_(8730376 6_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 87,273,018 | 87,303,766 |
| essv7011391 | Remapped | Perfect | NC_000004.12:g.(?_ 87273018)_(8730726 0_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 87,273,018 | 87,307,260 |
| essv7011392 | Remapped | Perfect | NC_000004.12:g.(?_ 87273018)_(8730726 0_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 87,273,018 | 87,307,260 |
| essv7011393 | Remapped | Perfect | NC_000004.12:g.(?_ 87273018)_(8730726 0_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 87,273,018 | 87,307,260 |
| essv7011386 | Remapped | Perfect | NC_000004.11:g.(?_ 88194170)_(8822491 8_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 88,194,170 | 88,224,918 |
| essv7011387 | Remapped | Perfect | NC_000004.11:g.(?_ 88194170)_(8822491 8_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 88,194,170 | 88,224,918 |
| essv7011389 | Remapped | Perfect | NC_000004.11:g.(?_ 88194170)_(8822491 8_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 88,194,170 | 88,224,918 |
| essv7011390 | Remapped | Perfect | NC_000004.11:g.(?_ 88194170)_(8822491 8_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 88,194,170 | 88,224,918 |
| essv7011391 | Remapped | Perfect | NC_000004.11:g.(?_ 88194170)_(8822841 2_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 88,194,170 | 88,228,412 |
| essv7011392 | Remapped | Perfect | NC_000004.11:g.(?_ 88194170)_(8822841 2_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 88,194,170 | 88,228,412 |
| essv7011393 | Remapped | Perfect | NC_000004.11:g.(?_ 88194170)_(8822841 2_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 88,194,170 | 88,228,412 |
| essv7011386 | Submitted genomic | NC_000004.10:g.(?_ 88413194)_(8844394 2_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 88,413,194 | 88,443,942 | ||
| essv7011387 | Submitted genomic | NC_000004.10:g.(?_ 88413194)_(8844394 2_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 88,413,194 | 88,443,942 | ||
| essv7011389 | Submitted genomic | NC_000004.10:g.(?_ 88413194)_(8844394 2_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 88,413,194 | 88,443,942 | ||
| essv7011390 | Submitted genomic | NC_000004.10:g.(?_ 88413194)_(8844394 2_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 88,413,194 | 88,443,942 | ||
| essv7011391 | Submitted genomic | NC_000004.10:g.(?_ 88413194)_(8844743 6_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 88,413,194 | 88,447,436 | ||
| essv7011392 | Submitted genomic | NC_000004.10:g.(?_ 88413194)_(8844743 6_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 88,413,194 | 88,447,436 | ||
| essv7011393 | Submitted genomic | NC_000004.10:g.(?_ 88413194)_(8844743 6_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 88,413,194 | 88,447,436 |