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dbVar

Database of genomic structural variation

esv2760928

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:174,250

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 816 SVs from 78 studies. See in: genome view

Remapped(Score: Perfect):106,723,167-106,897,416

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2760928	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	106,723,167	106,897,416
esv2760928	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	106,058,868	106,233,117
esv2760928	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000005.8	Chr5	106,086,767	106,261,016

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7012963	copy number gain	RW_0552	SNP array	SNP genotyping analysis	42
essv7012964	copy number loss	RW_0139	SNP array	SNP genotyping analysis	63
essv7012969	copy number loss	RW_0526	SNP array	SNP genotyping analysis	43

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7012963	Remapped	Perfect	NC_000005.10:g.(?_ 106723167)_(106897 416_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	106,723,167	106,897,416
essv7012964	Remapped	Perfect	NC_000005.10:g.(?_ 106751537)_(106754 001_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	106,751,537	106,754,001
essv7012969	Remapped	Perfect	NC_000005.10:g.(?_ 106751537)_(106754 001_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	106,751,537	106,754,001
essv7012963	Remapped	Perfect	NC_000005.9:g.(?_1 06058868)_(1062331 17_?)dup	GRCh37.p13	First Pass	NC_000005.9	Chr5	106,058,868	106,233,117
essv7012964	Remapped	Perfect	NC_000005.9:g.(?_1 06087238)_(1060897 02_?)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	106,087,238	106,089,702
essv7012969	Remapped	Perfect	NC_000005.9:g.(?_1 06087238)_(1060897 02_?)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	106,087,238	106,089,702
essv7012963	Submitted genomic		NC_000005.8:g.(?_1 06086767)_(1062610 16_?)dup	NCBI36 (hg18)		NC_000005.8	Chr5	106,086,767	106,261,016
essv7012964	Submitted genomic		NC_000005.8:g.(?_1 06115137)_(1061176 01_?)del	NCBI36 (hg18)		NC_000005.8	Chr5	106,115,137	106,117,601
essv7012969	Submitted genomic		NC_000005.8:g.(?_1 06115137)_(1061176 01_?)del	NCBI36 (hg18)		NC_000005.8	Chr5	106,115,137	106,117,601

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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