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dbVar

Database of genomic structural variation

esv2760932

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:41,326

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 304 SVs from 57 studies. See in: genome view

Remapped(Score: Perfect):82,773,021-82,814,346

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2760932	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000012.12	Chr12	82,773,021	82,814,346
esv2760932	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000012.11	Chr12	83,166,800	83,208,125
esv2760932	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000012.10	Chr12	81,690,931	81,732,256

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv6997448	copy number loss	SW_1485	SNP array	SNP genotyping analysis	24
essv6997449	copy number loss	SW_1070	SNP array	SNP genotyping analysis	37
essv6997450	copy number loss	SW_1249	SNP array	SNP genotyping analysis	41

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv6997448	Remapped	Perfect	NC_000012.12:g.(?_ 82773021)_(8281434 6_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	82,773,021	82,814,346
essv6997449	Remapped	Perfect	NC_000012.12:g.(?_ 82774282)_(8281434 6_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	82,774,282	82,814,346
essv6997450	Remapped	Perfect	NC_000012.12:g.(?_ 82774282)_(8281434 6_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	82,774,282	82,814,346
essv6997448	Remapped	Perfect	NC_000012.11:g.(?_ 83166800)_(8320812 5_?)del	GRCh37.p13	First Pass	NC_000012.11	Chr12	83,166,800	83,208,125
essv6997449	Remapped	Perfect	NC_000012.11:g.(?_ 83168061)_(8320812 5_?)del	GRCh37.p13	First Pass	NC_000012.11	Chr12	83,168,061	83,208,125
essv6997450	Remapped	Perfect	NC_000012.11:g.(?_ 83168061)_(8320812 5_?)del	GRCh37.p13	First Pass	NC_000012.11	Chr12	83,168,061	83,208,125
essv6997448	Submitted genomic		NC_000012.10:g.(?_ 81690931)_(8173225 6_?)del	NCBI36 (hg18)		NC_000012.10	Chr12	81,690,931	81,732,256
essv6997449	Submitted genomic		NC_000012.10:g.(?_ 81692192)_(8173225 6_?)del	NCBI36 (hg18)		NC_000012.10	Chr12	81,692,192	81,732,256
essv6997450	Submitted genomic		NC_000012.10:g.(?_ 81692192)_(8173225 6_?)del	NCBI36 (hg18)		NC_000012.10	Chr12	81,692,192	81,732,256

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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