esv2761050
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:11
- Validation:Not tested
- Clinical Assertions: No
- Region Size:5,168
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 127 SVs from 40 studies. See in: genome view
Overlapping variant regions from other studies: 127 SVs from 40 studies. See in: genome view
Overlapping variant regions from other studies: 20 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2761050 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 39,099,091 | 39,104,258 |
| esv2761050 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 39,066,867 | 39,072,034 |
| esv2761050 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 39,174,845 | 39,180,012 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7013641 | copy number loss | RW_0106 | SNP array | SNP genotyping analysis | 52 |
| essv7013642 | copy number loss | RW_0203 | SNP array | SNP genotyping analysis | 69 |
| essv7013643 | copy number loss | RW_0208 | SNP array | SNP genotyping analysis | 56 |
| essv7013644 | copy number loss | RW_0520 | SNP array | SNP genotyping analysis | 52 |
| essv7013646 | copy number loss | RW_0008 | SNP array | SNP genotyping analysis | 49 |
| essv7013647 | copy number loss | RW_0048 | SNP array | SNP genotyping analysis | 56 |
| essv7013648 | copy number loss | RW_0068 | SNP array | SNP genotyping analysis | 61 |
| essv7013649 | copy number loss | RW_0095 | SNP array | SNP genotyping analysis | 42 |
| essv7013650 | copy number loss | RW_0186 | SNP array | SNP genotyping analysis | 74 |
| essv7013651 | copy number loss | RW_0221 | SNP array | SNP genotyping analysis | 69 |
| essv7013652 | copy number loss | RW_0630 | SNP array | SNP genotyping analysis | 46 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7013641 | Remapped | Perfect | NC_000006.12:g.(?_ 39099091)_(3910425 8_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 39,099,091 | 39,104,258 |
| essv7013642 | Remapped | Perfect | NC_000006.12:g.(?_ 39099091)_(3910425 8_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 39,099,091 | 39,104,258 |
| essv7013643 | Remapped | Perfect | NC_000006.12:g.(?_ 39099091)_(3910425 8_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 39,099,091 | 39,104,258 |
| essv7013644 | Remapped | Perfect | NC_000006.12:g.(?_ 39099091)_(3910425 8_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 39,099,091 | 39,104,258 |
| essv7013646 | Remapped | Perfect | NC_000006.12:g.(?_ 39101136)_(3910425 8_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 39,101,136 | 39,104,258 |
| essv7013647 | Remapped | Perfect | NC_000006.12:g.(?_ 39101136)_(3910425 8_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 39,101,136 | 39,104,258 |
| essv7013648 | Remapped | Perfect | NC_000006.12:g.(?_ 39101136)_(3910425 8_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 39,101,136 | 39,104,258 |
| essv7013649 | Remapped | Perfect | NC_000006.12:g.(?_ 39101136)_(3910425 8_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 39,101,136 | 39,104,258 |
| essv7013650 | Remapped | Perfect | NC_000006.12:g.(?_ 39101136)_(3910425 8_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 39,101,136 | 39,104,258 |
| essv7013651 | Remapped | Perfect | NC_000006.12:g.(?_ 39101136)_(3910425 8_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 39,101,136 | 39,104,258 |
| essv7013652 | Remapped | Perfect | NC_000006.12:g.(?_ 39101136)_(3910425 8_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 39,101,136 | 39,104,258 |
| essv7013641 | Remapped | Perfect | NC_000006.11:g.(?_ 39066867)_(3907203 4_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 39,066,867 | 39,072,034 |
| essv7013642 | Remapped | Perfect | NC_000006.11:g.(?_ 39066867)_(3907203 4_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 39,066,867 | 39,072,034 |
| essv7013643 | Remapped | Perfect | NC_000006.11:g.(?_ 39066867)_(3907203 4_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 39,066,867 | 39,072,034 |
| essv7013644 | Remapped | Perfect | NC_000006.11:g.(?_ 39066867)_(3907203 4_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 39,066,867 | 39,072,034 |
| essv7013646 | Remapped | Perfect | NC_000006.11:g.(?_ 39068912)_(3907203 4_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 39,068,912 | 39,072,034 |
| essv7013647 | Remapped | Perfect | NC_000006.11:g.(?_ 39068912)_(3907203 4_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 39,068,912 | 39,072,034 |
| essv7013648 | Remapped | Perfect | NC_000006.11:g.(?_ 39068912)_(3907203 4_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 39,068,912 | 39,072,034 |
| essv7013649 | Remapped | Perfect | NC_000006.11:g.(?_ 39068912)_(3907203 4_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 39,068,912 | 39,072,034 |
| essv7013650 | Remapped | Perfect | NC_000006.11:g.(?_ 39068912)_(3907203 4_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 39,068,912 | 39,072,034 |
| essv7013651 | Remapped | Perfect | NC_000006.11:g.(?_ 39068912)_(3907203 4_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 39,068,912 | 39,072,034 |
| essv7013652 | Remapped | Perfect | NC_000006.11:g.(?_ 39068912)_(3907203 4_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 39,068,912 | 39,072,034 |
| essv7013641 | Submitted genomic | NC_000006.10:g.(?_ 39174845)_(3918001 2_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 39,174,845 | 39,180,012 | ||
| essv7013642 | Submitted genomic | NC_000006.10:g.(?_ 39174845)_(3918001 2_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 39,174,845 | 39,180,012 | ||
| essv7013643 | Submitted genomic | NC_000006.10:g.(?_ 39174845)_(3918001 2_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 39,174,845 | 39,180,012 | ||
| essv7013644 | Submitted genomic | NC_000006.10:g.(?_ 39174845)_(3918001 2_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 39,174,845 | 39,180,012 | ||
| essv7013646 | Submitted genomic | NC_000006.10:g.(?_ 39176890)_(3918001 2_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 39,176,890 | 39,180,012 | ||
| essv7013647 | Submitted genomic | NC_000006.10:g.(?_ 39176890)_(3918001 2_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 39,176,890 | 39,180,012 | ||
| essv7013648 | Submitted genomic | NC_000006.10:g.(?_ 39176890)_(3918001 2_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 39,176,890 | 39,180,012 | ||
| essv7013649 | Submitted genomic | NC_000006.10:g.(?_ 39176890)_(3918001 2_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 39,176,890 | 39,180,012 | ||
| essv7013650 | Submitted genomic | NC_000006.10:g.(?_ 39176890)_(3918001 2_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 39,176,890 | 39,180,012 | ||
| essv7013651 | Submitted genomic | NC_000006.10:g.(?_ 39176890)_(3918001 2_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 39,176,890 | 39,180,012 | ||
| essv7013652 | Submitted genomic | NC_000006.10:g.(?_ 39176890)_(3918001 2_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 39,176,890 | 39,180,012 |