esv2761171
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,413
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 413 SVs from 78 studies. See in: genome view
Overlapping variant regions from other studies: 413 SVs from 78 studies. See in: genome view
Overlapping variant regions from other studies: 205 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2761171 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 50,119,451 | 50,120,863 |
| esv2761171 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 51,032,011 | 51,033,423 |
| esv2761171 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 51,194,564 | 51,195,976 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7016779 | copy number loss | RW_0106 | SNP array | SNP genotyping analysis | 52 |
| essv7016780 | copy number loss | RW_0192 | SNP array | SNP genotyping analysis | 55 |
| essv7016781 | copy number loss | RW_0200 | SNP array | SNP genotyping analysis | 46 |
| essv7016782 | copy number loss | RW_0226 | SNP array | SNP genotyping analysis | 58 |
| essv7016783 | copy number loss | RW_0272 | SNP array | SNP genotyping analysis | 54 |
| essv7016784 | copy number loss | RW_0323 | SNP array | SNP genotyping analysis | 42 |
| essv7016785 | copy number loss | RW_0543 | SNP array | SNP genotyping analysis | 54 |
| essv7016786 | copy number loss | RW_0653 | SNP array | SNP genotyping analysis | 55 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7016779 | Remapped | Perfect | NC_000008.11:g.(?_ 50119451)_(5012086 3_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 50,119,451 | 50,120,863 |
| essv7016780 | Remapped | Perfect | NC_000008.11:g.(?_ 50119451)_(5012086 3_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 50,119,451 | 50,120,863 |
| essv7016781 | Remapped | Perfect | NC_000008.11:g.(?_ 50119451)_(5012086 3_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 50,119,451 | 50,120,863 |
| essv7016782 | Remapped | Perfect | NC_000008.11:g.(?_ 50119451)_(5012086 3_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 50,119,451 | 50,120,863 |
| essv7016783 | Remapped | Perfect | NC_000008.11:g.(?_ 50119451)_(5012086 3_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 50,119,451 | 50,120,863 |
| essv7016784 | Remapped | Perfect | NC_000008.11:g.(?_ 50119451)_(5012086 3_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 50,119,451 | 50,120,863 |
| essv7016785 | Remapped | Perfect | NC_000008.11:g.(?_ 50119451)_(5012086 3_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 50,119,451 | 50,120,863 |
| essv7016786 | Remapped | Perfect | NC_000008.11:g.(?_ 50119451)_(5012086 3_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 50,119,451 | 50,120,863 |
| essv7016779 | Remapped | Perfect | NC_000008.10:g.(?_ 51032011)_(5103342 3_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 51,032,011 | 51,033,423 |
| essv7016780 | Remapped | Perfect | NC_000008.10:g.(?_ 51032011)_(5103342 3_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 51,032,011 | 51,033,423 |
| essv7016781 | Remapped | Perfect | NC_000008.10:g.(?_ 51032011)_(5103342 3_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 51,032,011 | 51,033,423 |
| essv7016782 | Remapped | Perfect | NC_000008.10:g.(?_ 51032011)_(5103342 3_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 51,032,011 | 51,033,423 |
| essv7016783 | Remapped | Perfect | NC_000008.10:g.(?_ 51032011)_(5103342 3_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 51,032,011 | 51,033,423 |
| essv7016784 | Remapped | Perfect | NC_000008.10:g.(?_ 51032011)_(5103342 3_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 51,032,011 | 51,033,423 |
| essv7016785 | Remapped | Perfect | NC_000008.10:g.(?_ 51032011)_(5103342 3_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 51,032,011 | 51,033,423 |
| essv7016786 | Remapped | Perfect | NC_000008.10:g.(?_ 51032011)_(5103342 3_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 51,032,011 | 51,033,423 |
| essv7016779 | Submitted genomic | NC_000008.9:g.(?_5 1194564)_(51195976 _?)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 51,194,564 | 51,195,976 | ||
| essv7016780 | Submitted genomic | NC_000008.9:g.(?_5 1194564)_(51195976 _?)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 51,194,564 | 51,195,976 | ||
| essv7016781 | Submitted genomic | NC_000008.9:g.(?_5 1194564)_(51195976 _?)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 51,194,564 | 51,195,976 | ||
| essv7016782 | Submitted genomic | NC_000008.9:g.(?_5 1194564)_(51195976 _?)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 51,194,564 | 51,195,976 | ||
| essv7016783 | Submitted genomic | NC_000008.9:g.(?_5 1194564)_(51195976 _?)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 51,194,564 | 51,195,976 | ||
| essv7016784 | Submitted genomic | NC_000008.9:g.(?_5 1194564)_(51195976 _?)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 51,194,564 | 51,195,976 | ||
| essv7016785 | Submitted genomic | NC_000008.9:g.(?_5 1194564)_(51195976 _?)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 51,194,564 | 51,195,976 | ||
| essv7016786 | Submitted genomic | NC_000008.9:g.(?_5 1194564)_(51195976 _?)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 51,194,564 | 51,195,976 |