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dbVar

Database of genomic structural variation

esv2761344

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:270,235

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 915 SVs from 72 studies. See in: genome view

Remapped(Score: Perfect):45,958,880-46,229,114

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2761344	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000014.9	Chr14	45,958,880	46,229,114
esv2761344	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000014.8	Chr14	46,428,083	46,698,317
esv2761344	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000014.7	Chr14	45,497,833	45,768,067

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv6998588	copy number loss	SW_0003	SNP array	SNP genotyping analysis	37
essv6998590	copy number loss	SW_0077	SNP array	SNP genotyping analysis	34
essv6998591	copy number loss	SW_0186	SNP array	SNP genotyping analysis	39

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv6998588	Remapped	Perfect	NC_000014.9:g.(?_4 5958880)_(46229114 _?)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	45,958,880	46,229,114
essv6998590	Remapped	Perfect	NC_000014.9:g.(?_4 5996696)_(46093723 _?)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	45,996,696	46,093,723
essv6998591	Remapped	Perfect	NC_000014.9:g.(?_4 5996696)_(46093723 _?)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	45,996,696	46,093,723
essv6998588	Remapped	Perfect	NC_000014.8:g.(?_4 6428083)_(46698317 _?)del	GRCh37.p13	First Pass	NC_000014.8	Chr14	46,428,083	46,698,317
essv6998590	Remapped	Perfect	NC_000014.8:g.(?_4 6465899)_(46562926 _?)del	GRCh37.p13	First Pass	NC_000014.8	Chr14	46,465,899	46,562,926
essv6998591	Remapped	Perfect	NC_000014.8:g.(?_4 6465899)_(46562926 _?)del	GRCh37.p13	First Pass	NC_000014.8	Chr14	46,465,899	46,562,926
essv6998588	Submitted genomic		NC_000014.7:g.(?_4 5497833)_(45768067 _?)del	NCBI36 (hg18)		NC_000014.7	Chr14	45,497,833	45,768,067
essv6998590	Submitted genomic		NC_000014.7:g.(?_4 5535649)_(45632676 _?)del	NCBI36 (hg18)		NC_000014.7	Chr14	45,535,649	45,632,676
essv6998591	Submitted genomic		NC_000014.7:g.(?_4 5535649)_(45632676 _?)del	NCBI36 (hg18)		NC_000014.7	Chr14	45,535,649	45,632,676

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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