esv2761895
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:26,794
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 286 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 286 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 99 SVs from 15 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
esv2761895 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 6,527,388 | 6,554,181 |
esv2761895 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 6,577,389 | 6,604,182 |
esv2761895 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000016.8 | Chr16 | 6,517,390 | 6,544,183 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
essv7000509 | copy number loss | SW_1000 | SNP array | SNP genotyping analysis | 42 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
essv7000509 | Remapped | Perfect | NC_000016.10:g.(?_ 6527388)_(6554181_ ?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 6,527,388 | 6,554,181 |
essv7000509 | Remapped | Perfect | NC_000016.9:g.(?_6 577389)_(6604182_? )del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 6,577,389 | 6,604,182 |
essv7000509 | Submitted genomic | NC_000016.8:g.(?_6 517390)_(6544183_? )del | NCBI36 (hg18) | NC_000016.8 | Chr16 | 6,517,390 | 6,544,183 |