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dbVar

Database of genomic structural variation

esv2761965

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:15,114

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 225 SVs from 42 studies. See in: genome view

Remapped(Score: Perfect):162,310,935-162,326,048

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2761965	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	162,310,935	162,326,048
esv2761965	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	162,280,725	162,295,838
esv2761965	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000001.9	Chr1	160,547,349	160,562,462

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7001699	copy number loss	SW_1477	SNP array	SNP genotyping analysis	30
essv7001710	copy number loss	SW_1480	SNP array	SNP genotyping analysis	37

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7001699	Remapped	Perfect	NC_000001.11:g.(?_ 162310935)_(162326 048_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	162,310,935	162,326,048
essv7001710	Remapped	Perfect	NC_000001.11:g.(?_ 162314121)_(162326 048_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	162,314,121	162,326,048
essv7001699	Remapped	Perfect	NC_000001.10:g.(?_ 162280725)_(162295 838_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	162,280,725	162,295,838
essv7001710	Remapped	Perfect	NC_000001.10:g.(?_ 162283911)_(162295 838_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	162,283,911	162,295,838
essv7001699	Submitted genomic		NC_000001.9:g.(?_1 60547349)_(1605624 62_?)del	NCBI36 (hg18)		NC_000001.9	Chr1	160,547,349	160,562,462
essv7001710	Submitted genomic		NC_000001.9:g.(?_1 60550535)_(1605624 62_?)del	NCBI36 (hg18)		NC_000001.9	Chr1	160,550,535	160,562,462

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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