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dbVar

Database of genomic structural variation

esv2762121

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:356,727

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1431 SVs from 75 studies. See in: genome view

Remapped(Score: Perfect):70,812,168-71,168,894

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2762121	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	70,812,168	71,168,894
esv2762121	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	70,846,071	71,202,797
esv2762121	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	69,403,572	69,760,298

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7001257	copy number gain	SW_1051	SNP array	SNP genotyping analysis	61
essv7001258	copy number gain	SW_1222	SNP array	SNP genotyping analysis	29
essv7001259	copy number gain	SW_0201	SNP array	SNP genotyping analysis	46

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7001257	Remapped	Perfect	NC_000016.10:g.(?_ 70812168)_(7116889 4_?)dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	70,812,168	71,168,894
essv7001258	Remapped	Perfect	NC_000016.10:g.(?_ 70816990)_(7116241 2_?)dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	70,816,990	71,162,412
essv7001259	Remapped	Perfect	NC_000016.10:g.(?_ 70865009)_(7106141 7_?)dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	70,865,009	71,061,417
essv7001257	Remapped	Perfect	NC_000016.9:g.(?_7 0846071)_(71202797 _?)dup	GRCh37.p13	First Pass	NC_000016.9	Chr16	70,846,071	71,202,797
essv7001258	Remapped	Perfect	NC_000016.9:g.(?_7 0850893)_(71196315 _?)dup	GRCh37.p13	First Pass	NC_000016.9	Chr16	70,850,893	71,196,315
essv7001259	Remapped	Perfect	NC_000016.9:g.(?_7 0898912)_(71095320 _?)dup	GRCh37.p13	First Pass	NC_000016.9	Chr16	70,898,912	71,095,320
essv7001257	Submitted genomic		NC_000016.8:g.(?_6 9403572)_(69760298 _?)dup	NCBI36 (hg18)		NC_000016.8	Chr16	69,403,572	69,760,298
essv7001258	Submitted genomic		NC_000016.8:g.(?_6 9408394)_(69753816 _?)dup	NCBI36 (hg18)		NC_000016.8	Chr16	69,408,394	69,753,816
essv7001259	Submitted genomic		NC_000016.8:g.(?_6 9456413)_(69652821 _?)dup	NCBI36 (hg18)		NC_000016.8	Chr16	69,456,413	69,652,821

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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