esv2762133
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,230
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 138 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 138 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 63 SVs from 13 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2762133 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 15,273,311 | 15,275,540 |
| esv2762133 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 15,599,807 | 15,602,036 |
| esv2762133 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 15,472,394 | 15,474,623 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7005021 | copy number loss | RW_0544 | SNP array | SNP genotyping analysis | 52 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7005021 | Remapped | Perfect | NC_000001.11:g.(?_ 15273311)_(1527554 0_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 15,273,311 | 15,275,540 |
| essv7005021 | Remapped | Perfect | NC_000001.10:g.(?_ 15599807)_(1560203 6_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 15,599,807 | 15,602,036 |
| essv7005021 | Submitted genomic | NC_000001.9:g.(?_1 5472394)_(15474623 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 15,472,394 | 15,474,623 |