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dbVar

Database of genomic structural variation

esv2762366

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:14,832

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 264 SVs from 48 studies. See in: genome view

Remapped(Score: Perfect):79,226,621-79,241,452

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2762366	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	79,226,621	79,241,452
esv2762366	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	79,260,518	79,275,349
esv2762366	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	77,818,019	77,832,850

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7001452	copy number loss	SW_0030	SNP array	SNP genotyping analysis	35
essv7001453	copy number loss	SW_0211	SNP array	SNP genotyping analysis	33
essv7001454	copy number loss	SW_0860	SNP array	SNP genotyping analysis	32
essv7001456	copy number loss	SW_1476	SNP array	SNP genotyping analysis	44
essv7001457	copy number loss	SW_1263	SNP array	SNP genotyping analysis	42

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7001452	Remapped	Perfect	NC_000016.10:g.(?_ 79226621)_(7924145 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	79,226,621	79,241,452
essv7001453	Remapped	Perfect	NC_000016.10:g.(?_ 79226621)_(7924145 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	79,226,621	79,241,452
essv7001454	Remapped	Perfect	NC_000016.10:g.(?_ 79226621)_(7924145 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	79,226,621	79,241,452
essv7001456	Remapped	Perfect	NC_000016.10:g.(?_ 79226621)_(7924145 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	79,226,621	79,241,452
essv7001457	Remapped	Perfect	NC_000016.10:g.(?_ 79231350)_(7924145 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	79,231,350	79,241,452
essv7001452	Remapped	Perfect	NC_000016.9:g.(?_7 9260518)_(79275349 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	79,260,518	79,275,349
essv7001453	Remapped	Perfect	NC_000016.9:g.(?_7 9260518)_(79275349 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	79,260,518	79,275,349
essv7001454	Remapped	Perfect	NC_000016.9:g.(?_7 9260518)_(79275349 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	79,260,518	79,275,349
essv7001456	Remapped	Perfect	NC_000016.9:g.(?_7 9260518)_(79275349 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	79,260,518	79,275,349
essv7001457	Remapped	Perfect	NC_000016.9:g.(?_7 9265247)_(79275349 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	79,265,247	79,275,349
essv7001452	Submitted genomic		NC_000016.8:g.(?_7 7818019)_(77832850 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	77,818,019	77,832,850
essv7001453	Submitted genomic		NC_000016.8:g.(?_7 7818019)_(77832850 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	77,818,019	77,832,850
essv7001454	Submitted genomic		NC_000016.8:g.(?_7 7818019)_(77832850 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	77,818,019	77,832,850
essv7001456	Submitted genomic		NC_000016.8:g.(?_7 7818019)_(77832850 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	77,818,019	77,832,850
essv7001457	Submitted genomic		NC_000016.8:g.(?_7 7822748)_(77832850 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	77,822,748	77,832,850

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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