esv2762445
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:34,346
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 211 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 211 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 46 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2762445 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 30,592,132 | 30,626,477 |
| esv2762445 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 30,814,998 | 30,849,343 |
| esv2762445 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 30,668,502 | 30,702,847 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7010944 | copy number loss | SW_0804 | SNP array | SNP genotyping analysis | 34 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7010944 | Remapped | Perfect | NC_000002.12:g.(?_ 30592132)_(3062647 7_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 30,592,132 | 30,626,477 |
| essv7010944 | Remapped | Perfect | NC_000002.11:g.(?_ 30814998)_(3084934 3_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 30,814,998 | 30,849,343 |
| essv7010944 | Submitted genomic | NC_000002.10:g.(?_ 30668502)_(3070284 7_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 30,668,502 | 30,702,847 |