esv2762536
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:17,117
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 345 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 345 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 136 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2762536 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 105,286,975 | 105,304,091 |
| esv2762536 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 104,622,676 | 104,639,792 |
| esv2762536 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 104,650,575 | 104,667,691 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7012962 | copy number loss | RW_0652 | SNP array | SNP genotyping analysis | 62 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7012962 | Remapped | Perfect | NC_000005.10:g.(?_ 105286975)_(105304 091_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 105,286,975 | 105,304,091 |
| essv7012962 | Remapped | Perfect | NC_000005.9:g.(?_1 04622676)_(1046397 92_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 104,622,676 | 104,639,792 |
| essv7012962 | Submitted genomic | NC_000005.8:g.(?_1 04650575)_(1046676 91_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 104,650,575 | 104,667,691 |