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dbVar

Database of genomic structural variation

esv2762599

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:22,892

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 194 SVs from 40 studies. See in: genome view

Remapped(Score: Perfect):62,979,274-63,002,165

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2762599	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000017.11	Chr17	62,979,274	63,002,165
esv2762599	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000017.10	Chr17	61,056,635	61,079,526
esv2762599	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000017.9	Chr17	58,410,367	58,433,258

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7002641	copy number gain	SW_0586	SNP array	SNP genotyping analysis	36
essv7002642	copy number gain	SW_1175	SNP array	SNP genotyping analysis	45

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7002641	Remapped	Perfect	NC_000017.11:g.(?_ 62979274)_(6300216 5_?)dup	GRCh38.p12	First Pass	NC_000017.11	Chr17	62,979,274	63,002,165
essv7002642	Remapped	Perfect	NC_000017.11:g.(?_ 62979274)_(6300216 5_?)dup	GRCh38.p12	First Pass	NC_000017.11	Chr17	62,979,274	63,002,165
essv7002641	Remapped	Perfect	NC_000017.10:g.(?_ 61056635)_(6107952 6_?)dup	GRCh37.p13	First Pass	NC_000017.10	Chr17	61,056,635	61,079,526
essv7002642	Remapped	Perfect	NC_000017.10:g.(?_ 61056635)_(6107952 6_?)dup	GRCh37.p13	First Pass	NC_000017.10	Chr17	61,056,635	61,079,526
essv7002641	Submitted genomic		NC_000017.9:g.(?_5 8410367)_(58433258 _?)dup	NCBI36 (hg18)		NC_000017.9	Chr17	58,410,367	58,433,258
essv7002642	Submitted genomic		NC_000017.9:g.(?_5 8410367)_(58433258 _?)dup	NCBI36 (hg18)		NC_000017.9	Chr17	58,410,367	58,433,258

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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