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dbVar

Database of genomic structural variation

esv2763188

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:25,707

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 204 SVs from 35 studies. See in: genome view

Remapped(Score: Perfect):62,026,167-62,051,873

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2763188	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	62,026,167	62,051,873
esv2763188	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	62,253,302	62,279,008
esv2763188	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000002.10	Chr2	62,106,806	62,132,512

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7014656	copy number loss	SW_0142	SNP array	SNP genotyping analysis	27
essv7014667	copy number loss	SW_1082	SNP array	SNP genotyping analysis	39
essv7014678	copy number loss	SW_1128	SNP array	SNP genotyping analysis	30

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7014656	Remapped	Perfect	NC_000002.12:g.(?_ 62026167)_(6205187 3_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	62,026,167	62,051,873
essv7014667	Remapped	Perfect	NC_000002.12:g.(?_ 62026167)_(6205187 3_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	62,026,167	62,051,873
essv7014678	Remapped	Perfect	NC_000002.12:g.(?_ 62026167)_(6205187 3_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	62,026,167	62,051,873
essv7014656	Remapped	Perfect	NC_000002.11:g.(?_ 62253302)_(6227900 8_?)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	62,253,302	62,279,008
essv7014667	Remapped	Perfect	NC_000002.11:g.(?_ 62253302)_(6227900 8_?)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	62,253,302	62,279,008
essv7014678	Remapped	Perfect	NC_000002.11:g.(?_ 62253302)_(6227900 8_?)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	62,253,302	62,279,008
essv7014656	Submitted genomic		NC_000002.10:g.(?_ 62106806)_(6213251 2_?)del	NCBI36 (hg18)		NC_000002.10	Chr2	62,106,806	62,132,512
essv7014667	Submitted genomic		NC_000002.10:g.(?_ 62106806)_(6213251 2_?)del	NCBI36 (hg18)		NC_000002.10	Chr2	62,106,806	62,132,512
essv7014678	Submitted genomic		NC_000002.10:g.(?_ 62106806)_(6213251 2_?)del	NCBI36 (hg18)		NC_000002.10	Chr2	62,106,806	62,132,512

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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